Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01308 ATGGGGTGTTTGGTTAGCCGACAGGCGTCTTCTAGAAGTGTAGAACCCCCTGTAGATAACGGGAAGAGGAATCAAATTACTGAGCCTGGTGTCCAAGTCGAGCATGTACAGGAAAAAGAACTAGAGCATGTTAATGCTAATGTAGAGGAGCATGCAAATGTGAGCAAGGAGGAGGAGCAGAAGGCTGATGGTGGTCAGGATCGGCCACGAGCAGAGCGGCGGAGGTCGAGGAAGGTTTCAAGGCCTGTTAACCTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACAGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACGTTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAGGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCGGAAAGTGTGAAATTTATGGCTAGAGAGATTCTAATCCTTCGGAGATTAAATCATAATAACGTTGTGAAATTGGAGGGGTTGGTCACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCTGGTCTTGCTGCAAATCCATCAATCAAGTTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAATCGTCATGTGCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGATTTTGGATTGGCTTCTTTCTTTGATCCTAATCACAAGCACCCAATGACTAGTCGAGTTGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGACCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAGCTTCCAAATGCAACATTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCGCTATCTTCCCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGTTGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCAAACCCTCCAGCCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCCCGGAGACTAAGAGCAGCTAACAAAGCCCAGGGAGATGGAGTGAAGAAAACACGCACACGTGTTAGGGCGATTCCAGCTCCTGAAGCCAATGCAGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGCGAAAAGTTCCCCCCACCGCACCAGGACGGAGCGCTTGGCTTTACGCTAGGATATTCACGGCATATGGATCCATCCGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTACTCTAAGGAGCCAGTCCAAGTCTGGTCTGGTCCACTGGTCCCTGGTGCTGGCACTGATGCTCCACCTAGGCAGAAGAAGCATGTGGGAGGAGTGACATCAAATTCTTCCCACTGTTCATCCAAAAACATTGACAATCAATCAGCCGGGCCTGCTCTAAGCTGA 1743 45.78 MGCLVSRQASSRSVEPPVDNGKRNQITEPGVQVEHVQEKELEHVNANVEEHANVSKEEEQKADGGQDRPRAERRRSRKVSRPVNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRHVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPLSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAANKAQGDGVKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHMDPSGVPPDIPFSSTLFTYSKEPVQVWSGPLVPGAGTDAPPRQKKHVGGVTSNSSHCSSKNIDNQSAGPALS 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8971984 8985262 - CmoCh11G013080.1 Cmo11g01308 391927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01308 580 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Cmo11g01308 580 MobiDBLite consensus disorder prediction 1 92 - -
Cmo11g01308 580 Gene3D Transferase(Phosphotransferase) domain 1 204 445 - -
Cmo11g01308 580 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01308 580 MobiDBLite consensus disorder prediction 415 435 - -
Cmo11g01308 580 PANTHER CELL DIVISION PROTEIN KINASE 49 547 - -
Cmo11g01308 580 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01308 580 MobiDBLite consensus disorder prediction 536 580 - -
Cmo11g01308 580 CDD STKc_CDK9_like 121 405 - -
Cmo11g01308 580 MobiDBLite consensus disorder prediction 555 580 - -
Cmo11g01308 580 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Cmo11g01308 580 MobiDBLite consensus disorder prediction 33 73 - -
Cmo11g01308 580 PANTHER OS01G0367700 PROTEIN 49 547 - -
Cmo11g01308 580 MobiDBLite consensus disorder prediction 1 31 - -
Cmo11g01308 580 Coils Coil 41 61 - -
Cmo11g01308 580 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01308 580 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Cmo11g01308 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01167 Cmo-Chr10:10390835 Cmo11g01308 Cmo-Chr11:8971984 0 dispersed
Cmo11g01308 Cmo-Chr11:8971984 Cmo12g01117 Cmo-Chr12:10215589 0 dispersed
Cmo11g01308 Cmo-Chr11:8971984 Cmo06g01464 Cmo-Chr6:10556839 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74681 PF00069 Pkinase 4.70E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01308 K08819 - csv:101215893 1041.57