Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01317 ATGACGCCGGTCCTCAGTGGAAGCTCGAAAGCGAAGGGATCCGAATTTGGCCCTGGAAAGCGTACGACGATAATTTCACAGAGGAAGAGAGAGAGAGAGAGAGAGAGAAAGAGCTCTGAATCAAACCCATCTTCCTCCGTTCTCTCCCACTTTCTACACGCTTTCTTTCCTCCCAACCTCTGCTTCAGCTTTATCCTTTCGAGAATTGGTGTCTACTCGTTCGAATCCAGGCAAGCTTTAGTCTCCTCTCTGTTCTTTTGTTTTCTTTCTGCTGCGATCGGCTCCATTTCTGTTTCAGCTTGCTTTCATTTTCTTTTTCATTCTCGATTGATTGATGGATTGATCCAGGGTTGGAGCTTCATTGATTTTGTGTTAGTGTTTTATGCGTGTCGAATGAAGCGTATCTTGATTACGCCTTGCATCATTAGTGCTCCAAATTTGATATCCCTATTTATACAGTACCCTGCAGGAACGATGATTAAGCTTTTTAAAGTGAAGGAAAAGCAGAGAGAGATCGCAAAAAATGCCGATGGAAAACCTCCTGTCAAGAAGCAAACTGCAGGAGAATTGCGTCTTCAAAAAGATATCAGTGAACTGAACCTGCCAAAAACGTGTAGTATATCCTTTCCTAATGGCAAGGATGAGTTGATGAACTTTGAGGTCACTATTCATCCTGATGAAGGATATTATCTAGGTGGTACATTTCTCTTCTCTTTCCAAGTTTCCCCTGTCTACCCTCACGAGCCACCAAAAGTGAAGTGCAAGACAAAGGTGTATCATCCTAATATCGACTTGGAAGGAAATGTTTGTCTCAATATTTTAAGAGAGGACTGGAAGCCCGTTCTGAATATCAACACTATAATATACGGATTATTTCATCTTTTCACGCAACCAAATCATGAAGACCCCCTCAACCACGATGCCGCTGCTGTTTTGAGGGATAACCCAAAGATGTTCGAATCCAATGTGCGAAGAGCCATGGCTGGAGGTTACGTGGGGCACACTTTCTTCACACGTTGCATGTAG 1026 43.18 MTPVLSGSSKAKGSEFGPGKRTTIISQRKRERERERKSSESNPSSSVLSHFLHAFFPPNLCFSFILSRIGVYSFESRQALVSSLFFCFLSAAIGSISVSACFHFLFHSRLIDGLIQGWSFIDFVLVFYACRMKRILITPCIISAPNLISLFIQYPAGTMIKLFKVKEKQREIAKNADGKPPVKKQTAGELRLQKDISELNLPKTCSISFPNGKDELMNFEVTIHPDEGYYLGGTFLFSFQVSPVYPHEPPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNHEDPLNHDAAAVLRDNPKMFESNVRRAMAGGYVGHTFFTRCM 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9107359 9111195 - CmoCh11G013170.1 Cmo11g01317 391936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01317 341 MobiDBLite consensus disorder prediction 24 40 - -
Cmo11g01317 341 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 259 274 IPR023313 -
Cmo11g01317 341 Gene3D Ubiquitin Conjugating Enzyme 183 341 IPR016135 -
Cmo11g01317 341 PANTHER - 171 331 - -
Cmo11g01317 341 SMART ubc_7 190 332 - -
Cmo11g01317 341 CDD UBCc 191 325 IPR000608 -
Cmo11g01317 341 Pfam Ubiquitin-conjugating enzyme 191 326 IPR000608 -
Cmo11g01317 341 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 187 332 IPR000608 -
Cmo11g01317 341 SUPERFAMILY UBC-like 181 336 IPR016135 -
Cmo11g01317 341 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 171 331 - -
Cmo11g01317 341 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01317 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - csv:101214340 368.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01317 Cmo19g00660 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01034 Cmo-Chr3:7740876 Cmo11g01317 Cmo-Chr11:9107359 2.00E-119 dispersed
Cmo11g01317 Cmo-Chr11:9107359 Cmo09g01151 Cmo-Chr9:7186495 1.55E-25 dispersed
Cmo11g01317 Cmo-Chr11:9107359 Cmo19g00660 Cmo-Chr19:7096803 3.65E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01317 Cmo_Chr11 FPKM 17.797741 19.426104 15.15989 16.104311 11.479903 10.964718 11.872271 17.074806 15.109117 16.254868