Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01336 ATGCAAAAGCTTTTGCTATCGTTTTTGGTTCTCATTCTGGTTTTGTTCTCCTCTCCAACGCGGAGTTCTGATCAATCTGAATCGACCTATTCGCACTTTGTGCTTGTTCATGGGGCATGTCTTGGCGCTTGGTCATGGTACAAGGTCATTACCCTTTTGCAAACGGCTGGCCACAAAGTGACTGCACTTGACATGGCCGCTGCCGGGATCAACCAGACGCAGCCCGAGTCGTTGGCATCGCTTACTGAGTACTTCGAGCCATTGTTGAGCTTCATGGAAGCGTTGCCTTCAGATGAGCGGATTGTTCTCGTCGGCCACAGCCTTGGCGGGCTCGGCATCTCCATGGCCATGGAGAGTTTCCCTGAGAAAGTGTCTGTTGCCATTTTTGTGACTGCAGCCATGCCTGGTCCCATTGTGGGGTCTTTTACCATTGAGGAACTGATGAAAATACTTGAAATGCTAAGAGCCTTCTACTCCGAAGAGGATTCCAAAGCTTCTGATTCGAACCTATTCCTATTCTCCCAAGAAGAATTGAAAACCAAGCTTTTCCCTCTCTCGCCACCTCAGGATGTGGCATTGGCAACAACACTGGAGAGGCCCCAAGCGATGTTCGGCATCTTGGAGTCGATGAAGGAGCTGAGGCTGACAAGAGACAAATACGGGTCGGTGAAAAGGGCTTTCATCATATCAGAAAAGGACGAGATGACATCCAAGATCATGGTGTGGGCAATGCTCACATTCAACAAGCCCGATCGTCAGGCCGAGGTTAAGGGATCAGATCACATGGTCATGGCTTCCAAGCCCCTTGAACTTGCCCAACAACTCACCACCATCGCTCAAGACTTCGCTTCTTCTTCCACATATCATATGTAA 873 49.48 MQKLLLSFLVLILVLFSSPTRSSDQSESTYSHFVLVHGACLGAWSWYKVITLLQTAGHKVTALDMAAAGINQTQPESLASLTEYFEPLLSFMEALPSDERIVLVGHSLGGLGISMAMESFPEKVSVAIFVTAAMPGPIVGSFTIEELMKILEMLRAFYSEEDSKASDSNLFLFSQEELKTKLFPLSPPQDVALATTLERPQAMFGILESMKELRLTRDKYGSVKRAFIISEKDEMTSKIMVWAMLTFNKPDRQAEVKGSDHMVMASKPLELAQQLTTIAQDFASSSTYHM 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9253986 9256273 + CmoCh11G013360.1 Cmo11g01336 391955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01336 290 PANTHER ESTERASE PIR7A-RELATED 19 281 - -
Cmo11g01336 290 PANTHER METHYLESTERASE FAMILY MEMBER 19 281 IPR045889 -
Cmo11g01336 290 Pfam Alpha/beta hydrolase family 33 273 IPR000073 -
Cmo11g01336 290 Gene3D alpha/beta hydrolase 29 283 IPR029058 -
Cmo11g01336 290 SUPERFAMILY alpha/beta-Hydrolases 30 277 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01336 - - - cmo:103495205 389.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00435 Cmo11g01336 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01009 Cmo-Chr3:7582810 Cmo11g01336 Cmo-Chr11:9253986 3.41E-55 dispersed
Cmo11g01336 Cmo-Chr11:9253986 Cmo15g00245 Cmo-Chr15:1211544 9.03E-41 dispersed
Cmo02g00435 Cmo-Chr2:2270477 Cmo11g01336 Cmo-Chr11:9253986 6.51E-44 transposed
Cmo02g00436 Cmo-Chr2:2272483 Cmo11g01336 Cmo-Chr11:9253986 6.29E-15 transposed
Cmo13g00537 Cmo-Chr13:6245812 Cmo11g01336 Cmo-Chr11:9253986 2.14E-68 transposed
Cmo11g01336 Cmo-Chr11:9253986 Cmo07g00740 Cmo-Chr7:3357774 3.43E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01336 Cmo_Chr11 FPKM 0.161959 0.0 0.0 0.0 0.14704 0.0 0.0 0.0 0.0 0.120074