Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01342 ATGGATCGGTCGGCGCTCACTGTTGGTCCAGGAATGGACATTCCGATCATGCATGATAGCGATCGTTACGAGCTTGTGCGGGACATTGGCTCTGGGAATTTCGGGATTGCTAGATTGATGAGAGACAAGCAGACGGGGGAGCTCGTCGCCGTCAAGTACATCGAGAGAGGTGAGAAGATAGATGAGAATGTGAAGCGGGAGATAATAAATCACAGATCTTTAAGGCATCCTAACATTGTCAGATTCAAGGAGGTGATCTTAACCCCAACCCATCTGGCAATTGTGATGGAATATGCATCTGGAGGAGAGCTCTTTGAGCGGATCTGTAATGCTGGGCGGTTCAGTGAGGACGAGGCGCGTTTCTTCTTTCAGCAACTCATATCAGGTGTCAGTTATTGTCATGCAATGCAAGTATGTCATCGTGATTTGAAATTGGAGAATACATTGCTGGATGGAAGTCCTGCTCCTCGCTTGAAAATTTGTGATTTTGGATACTCCAAGTCTTCTGTGCTGCACTCACAGCCAAAATCAACGGTTGGCACCCCTGCGTATATTGCTCCTGAGGTGTTGCTTAAGAAAGAGTATGATGGCAAGATTGCAGACGTGTGGTCGTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATACCCCTTTGAGGACCCTGAAGATCCGAAAAACTTTCGTAAAACAATTCAGCGAATCCTGAATGTACAGTACTCAATTCCTGATTATGTTCTTATTTCTCCCGAGTGTCGCCATTTAATCTCTAGGATTTTTGTTGCAGACCCAACAAAGAGGATAACAATCCCGGAGATAAGAAACCACGAGTGGTTTCTGAAGAATCTTCCAGCCGATCTCGTAGACGAAAGGGTGATGAATAACCAATACGAGGAGCCTGATCAACCCATGCAAACGAGTGAAGAAATCATGCAGATAATCGCCGAGGCTGGCCTTCCCGCTGCCGGGACACAGAGCCTCAACCAGTACCTTACTGGCAGCCTTGATATCGATGACGATATGGAGGACGACCTAGAGACTGATCCTGACCTCGATCTTGATATCGACAGCAGTGGAGAGATTGTCTATGCAATGTAA 1098 46.9 MDRSALTVGPGMDIPIMHDSDRYELVRDIGSGNFGIARLMRDKQTGELVAVKYIERGEKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQRILNVQYSIPDYVLISPECRHLISRIFVADPTKRITIPEIRNHEWFLKNLPADLVDERVMNNQYEEPDQPMQTSEEIMQIIAEAGLPAAGTQSLNQYLTGSLDIDDDMEDDLETDPDLDLDIDSSGEIVYAM 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9288635 9291768 - CmoCh11G013420.1 Cmo11g01342 391961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01342 365 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Cmo11g01342 365 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Cmo11g01342 365 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 14 358 - -
Cmo11g01342 365 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01342 365 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Cmo11g01342 365 SUPERFAMILY Protein kinase-like (PK-like) 15 304 IPR011009 -
Cmo11g01342 365 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01342 365 PANTHER SERINE/THREONINE KINASE 14 358 - -
Cmo11g01342 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Cmo11g01342 365 CDD STKc_SnRK2-3 22 278 - -
Cmo11g01342 365 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01342 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101209176 692.575
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00439 Cmo11g01342 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00439 Cmo-Chr2:2304010 Cmo11g01342 Cmo-Chr11:9288635 0 dispersed
Cmo06g00845 Cmo-Chr6:4713364 Cmo11g01342 Cmo-Chr11:9288635 0 dispersed
Cmo07g00560 Cmo-Chr7:2515333 Cmo11g01342 Cmo-Chr11:9288635 1.10E-117 dispersed
Cmo07g00561 Cmo-Chr7:2517927 Cmo11g01342 Cmo-Chr11:9288635 3.53E-15 dispersed
Cmo07g01406 Cmo-Chr7:8072977 Cmo11g01342 Cmo-Chr11:9288635 2.77E-159 dispersed
Cmo11g01342 Cmo-Chr11:9288635 Cmo20g01183 Cmo-Chr20:11688204 0 dispersed
Cmo11g01342 Cmo-Chr11:9288635 Cmo02g00562 Cmo-Chr2:3219604 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74682 PF00069 Pkinase 2.10E-71 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01342 Cmo_Chr11 FPKM 19.901743 25.03405 26.872883 27.904358 39.552868 40.026413 38.912743 29.496605 29.511435 30.236528