Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01347 ATGGGGCGCCCTCGTTGCTTCTTGGATATCAGTATTGGAGGTGATCTCGAGGGTAGAATTGTGGTAGAGCTCTATGACGATGTGGTGCCTAAAACAGCTGAGAATTTCAGAGCTCTTTGCACTGGCGAGAAGGGAATTGGTCCTCATACGGGTGTTCCTCTTCATTTTAAGGTCGTTTCTTCTCTATTTTTATGGTGTTTTGTGTTCGGGTCGTGTTTCCATCGTGTTATAAAAGGGTTCATGGTACAAGGTGGAGATATTTCTGCTGGAGATGGTACTGGTGGAGAGTCTATATATGGCATGAAATTCGACGATGAGAATTTCGAGGTGAAACATGAAAGGAAAGGAATGTTATCTATGGCTAATTCTGGTCCCAACACAAATGGATCCCAATTTTTTATAAGTACTACTCGCACTTCTCATTTAGACGGGAAACATGTAGTGTTTGGGAAGGTTGTGAAAGGAATGGGCGTTGTTCGTTCAATTGAACATGTTACTACTGGTGAAAATGATCGCCCTACTGCGGACGTCGTTATTGTGGATTGTGGAGAAATTCCTGAGGGAGCAGATGACGGGATTTCGAACTTTTTCAATGATGGGGATACGTTTCCTGATTGGCCAGCTGATCTAGAACAGACACCTAGTGAACTTGAATGGTGGGTGAATGCTGTAGATTCTGTGAAGGTTTTTGGTAATGAGCATTACAAGAAGCAAGACTACAAGATGGCTCTTAGAAAGTATCGGAAGGCTTTACGCTACCTCGATATCTGCTGGGAAAAAGAAGGAATTGACGAAGGGGATCTAAAAGGAGCGTTGTTGGACACCGATTTTGCAATGCGTGACGGAGACAATAATGTAAAAGCTTTGTTTCGCCAAGGTCAGGCATACATGGCTCTTAATGACATCGATTCCGCTGTCGAAAGTTTCAAAAAGGCATTGGATTTGGAGCCAAATGACGGTAATAGCTTTTTTTATCGTAGTGTTGCTGTTGATTCTGAAATTGAAAACCAAGAGGGGTTTGGACATTTCCTCCCTTATTTTATTGGTGTTAATGGCAATATTCTTGAAGCACCCTCTCTTCTCTGCCATGAAATGTTGTCTAGAACACTGTCTTTCTCTGAGTTGACTGCAATAAAGAAAGAGCTCGCTGCTGCAAGGAAAAAGGTAATGAAAGTAAATTCTTTGGTTGAGATGACACGTGTATTGAACGACGGGTTTGTGTGGTATTTGATGCAGATTGTCGACAGACGTAATCAAGAAAGAAAAGCATATAGCAAGATGTTCCAGTAG 1290 42.17 MGRPRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKVVSSLFLWCFVFGSCFHRVIKGFMVQGGDISAGDGTGGESIYGMKFDDENFEVKHERKGMLSMANSGPNTNGSQFFISTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGENDRPTADVVIVDCGEIPEGADDGISNFFNDGDTFPDWPADLEQTPSELEWWVNAVDSVKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGDLKGALLDTDFAMRDGDNNVKALFRQGQAYMALNDIDSAVESFKKALDLEPNDGNSFFYRSVAVDSEIENQEGFGHFLPYFIGVNGNILEAPSLLCHEMLSRTLSFSELTAIKKELAAARKKVMKVNSLVEMTRVLNDGFVWYLMQIVDRRNQERKAYSKMFQ 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9353349 9357072 + CmoCh11G013470.1 Cmo11g01347 391966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01347 429 Gene3D Tetratricopeptide repeat domain 211 265 IPR011990 GO:0005515
Cmo11g01347 429 SUPERFAMILY Cyclophilin-like 3 187 IPR029000 -
Cmo11g01347 429 SUPERFAMILY TPR-like 221 327 IPR011990 GO:0005515
Cmo11g01347 429 Pfam Tetratricopeptide repeat 286 319 IPR001440 GO:0005515
Cmo11g01347 429 CDD cyclophilin_ABH_like 4 183 - -
Cmo11g01347 429 Gene3D - 1 191 IPR029000 -
Cmo11g01347 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 265 - -
Cmo11g01347 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 266 321 - -
Cmo11g01347 429 Gene3D Tetratricopeptide repeat domain 266 338 IPR011990 GO:0005515
Cmo11g01347 429 SMART tpr_5 224 257 IPR019734 GO:0005515
Cmo11g01347 429 SMART tpr_5 286 319 IPR019734 GO:0005515
Cmo11g01347 429 ProSiteProfiles TPR repeat profile. 286 319 IPR019734 GO:0005515
Cmo11g01347 429 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 183 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 184 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 ProSiteProfiles TPR repeat region circular profile. 286 319 - -
Cmo11g01347 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 143 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 IPR002130 GO:0000413|GO:0003755
Cmo11g01347 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 266 321 - -
Cmo11g01347 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01347 K05864 PPID, CYPD; peptidyl-prolyl isomerase D [EC:5.2.1.8] - csv:101208688 564.688
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01347 Cmo20g00895 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01347 Cmo-Chr11:9353349 Cmo20g00895 Cmo-Chr20:4540672 0 dispersed
Cmo11g01347 Cmo-Chr11:9353349 Cmo17g01187 Cmo-Chr17:9549269 2.28E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0051803 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01347 Cmo_Chr11 FPKM 2.35499 2.014494 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0