Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01351 ATGGCGGACGATCCCTTTCTCTTCACTCAGGAAGCTTTTATTTTACAGGTTCCCAAGAAATCCCCATTGATGCTAAGGATGATCGTGTTGGTCTTTGCCATGGTCTGTGGTGTATTTATGTGCTCCGTTTGTCTCAAACAAATTAGCACCAAATCGAAGGTTGGGTTTCTGAAAGTCCAGGTTATTGAAATGCCATGTTCAAAGCCATGGATTGATCCTTCGGATGTTCCTTTTGTGCACTTTCCTAAACCTATGACATATAGCAGGGCTGAATGTGCTTGCCACCCGGTTCGATTTTTTGCCATTTTGTCAATGCAGAGATCAGGGAGTGGTTGGTTTGAGACATTATTGAATAATCATACTAACATAAGCTCCAATGGAGAGATATTCTCTGTTAAAGTTAGGAGAAGCAATGTTTCAACCATTGTTGAAACGTTGGATAAAGTTTACAATCTTGATTGGTTTAGTAGCGCTTCGAAAAATGAGTGCACCGCTGCTGTTGGTCTTAAGTGGATGCTTAATCAGGGGTTGATGCAACACCATGTCGAAATAGTTGAGTACTTCAAACGTCGTGGGGTATCTGCCATTTTCCTATTCCGAAGAAACCTTCTACGTAGAATGATCTCAGTACTTGCAAATTCTTACGATCGAAACGCCAAGCTGTTGAATGGAACCCACAAGTCTCATGTGCATTCACATCATGAGTTTGAAACTCAAGGAAGGTCTGAGCTTGTTATAGAAATGTTTCAGGCTGATATTCTCGCAAAATACAAGCCCGTAATCAATGCCACTCTGTTGATACCCAATTTGAAGAAAGTAGAAGAAACAACAGCCAAAGCCTTGGAGTACTTCAAGAGCACCCGACACATCGTTTTATATTACGAAGATGTAGTTAGGAACCGCACTAAATTAAGAGATCTTCAAGACTTTCTGAAGGTTCCACAGAGGGAGTTAAAGAGTCGTCAGGTGAAGATACACCGAGGTTCATTGTCGAACCAGATCGAGAACTGGGAAGATGTCCAGAAGACGGTACAAGGTAGCCGATACGAGAGTTTATTACACGCAGATTACCGGAAGTAA 1080 41.85 MADDPFLFTQEAFILQVPKKSPLMLRMIVLVFAMVCGVFMCSVCLKQISTKSKVGFLKVQVIEMPCSKPWIDPSDVPFVHFPKPMTYSRAECACHPVRFFAILSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRSNVSTIVETLDKVYNLDWFSSASKNECTAAVGLKWMLNQGLMQHHVEIVEYFKRRGVSAIFLFRRNLLRRMISVLANSYDRNAKLLNGTHKSHVHSHHEFETQGRSELVIEMFQADILAKYKPVINATLLIPNLKKVEETTAKALEYFKSTRHIVLYYEDVVRNRTKLRDLQDFLKVPQRELKSRQVKIHRGSLSNQIENWEDVQKTVQGSRYESLLHADYRK 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9393075 9397600 - CmoCh11G013510.1 Cmo11g01351 391970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01351 359 Gene3D - 97 343 IPR027417 -
Cmo11g01351 359 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 357 - -
Cmo11g01351 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 323 IPR027417 -
Cmo11g01351 359 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01351 - - - csv:101207076 625.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01351 Cmo19g00632 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01351 Cmo-Chr11:9393075 Cmo19g00632 Cmo-Chr19:6882263 0 wgd
Cmo11g01351 Cmo-Chr11:9393075 Cmo07g00726 Cmo-Chr7:3280641 3.84E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g446 . Blo15g00732 Bda06g01046 Bda08g00847 Bpe07g00394 Bpe12g00059 . Bma12g00468 Cmo19g00632 Cmo11g01351 . . . . Sed10g2042 Cpe04g00271 Cpe15g00497 Bhi05g01131 Tan02g0894 Cmetu01g2176 . Hepe02g0576 . . Cla02g00588 Cam02g0620 Cec02g0619 Cco02g0636 Clacu02g0618 Cmu02g0613 Cre02g0944 Cone12ag1104 Cone8ag1144 . . . Csa07g00771 . Cme01g00038 . Blo13g00571 Bda15g00032 . . . . Bma08g00797 . . . Cma11g01761 Cma19g00613 . Car19g00466 . . . . . . . . . . . . . . . . Lsi11g01019 . Chy01g00044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003442 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 5 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01351 Cmo_Chr11 FPKM 5.288185 5.504937 10.731938 9.523478 3.715681 2.883581 3.867956 24.460781 22.636049 23.102528