Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01356 ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTCAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAACCACACGATATCTCGTCCTTCAGTGTTAGAAGGTCCAGCCGATTTGCGGATAAACCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTAACAGAAGTTATAGAAGGACATATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGATTCTAGATACCCAAGTTTTGTGAAGCCAATGCTTCAATCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGCAACACCTTCCCCGTGAGGATGAAATGGTTACTCTGCTGGACGAGGATGGAAATGAGTTCCAAACAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTGCCATTGATCACCAGTTAGTAGATGGGGATTCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCGTACAATTTGGAAGACAAAGAAGATACCAATGAGGATTCCGATGATACCCAGTCGGAAAAAAGTGGGCAAAGAAGTACCAGATCATCAGGGCACAAAATCATGGCAAATAATTCTGAAGATAAATCAGATAAATGCGAGAATTCCGAGGTCTCCCAACTCGAAAAGAGTGGCAAAAGAAGTACTAGATCAGCAAGTAAAGGGAAGAAGTAA 873 44.67 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSYRRTYQRRDLLNRVYASHEERQYAIDRARDLQSSLDSRYPSFVKPMLQSHVTGGFWLGLPVQFCKQHLPREDEMVTLLDEDGNEFQTKYLAEKTGLSGGWRGFAIDHQLVDGDSLVFHLTKPTEFKVYIIRAYNLEDKEDTNEDSDDTQSEKSGQRSTRSSGHKIMANNSEDKSDKCENSEVSQLEKSGKRSTRSASKGKK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9429577 9437894 + CmoCh11G013560.1 Cmo11g01356 391975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01356 290 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 231 IPR044837 -
Cmo11g01356 290 MobiDBLite consensus disorder prediction 255 282 - -
Cmo11g01356 290 MobiDBLite consensus disorder prediction 228 290 - -
Cmo11g01356 290 MobiDBLite consensus disorder prediction 31 88 - -
Cmo11g01356 290 CDD B3_DNA 129 220 IPR003340 GO:0003677
Cmo11g01356 290 Gene3D - 105 224 IPR015300 -
Cmo11g01356 290 MobiDBLite consensus disorder prediction 32 47 - -
Cmo11g01356 290 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 2 231 - -
Cmo11g01356 290 SUPERFAMILY DNA-binding pseudobarrel domain 124 221 IPR015300 -
Cmo11g01356 290 SMART B3_2 131 222 IPR003340 GO:0003677
Cmo11g01356 290 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
Cmo11g01356 290 Coils Coil 6 33 - -
Cmo11g01356 290 Pfam B3 DNA binding domain 131 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01356 Cmo-Chr11:9429577 Cmo12g00470 Cmo-Chr12:2875151 1.34E-67 dispersed
Cmo11g01356 Cmo-Chr11:9429577 Cmo19g00628 Cmo-Chr19:6853976 4.66E-156 wgd
Cmo11g01356 Cmo-Chr11:9429577 Cmo04g00537 Cmo-Chr4:2671750 5.09E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10620 PF02362 B3 3.50E-18 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01356 - - bhj:120077841 458.759