Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01356 | ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTCAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAACCACACGATATCTCGTCCTTCAGTGTTAGAAGGTCCAGCCGATTTGCGGATAAACCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTAACAGAAGTTATAGAAGGACATATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGATTCTAGATACCCAAGTTTTGTGAAGCCAATGCTTCAATCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGCAACACCTTCCCCGTGAGGATGAAATGGTTACTCTGCTGGACGAGGATGGAAATGAGTTCCAAACAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTGCCATTGATCACCAGTTAGTAGATGGGGATTCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCGTACAATTTGGAAGACAAAGAAGATACCAATGAGGATTCCGATGATACCCAGTCGGAAAAAAGTGGGCAAAGAAGTACCAGATCATCAGGGCACAAAATCATGGCAAATAATTCTGAAGATAAATCAGATAAATGCGAGAATTCCGAGGTCTCCCAACTCGAAAAGAGTGGCAAAAGAAGTACTAGATCAGCAAGTAAAGGGAAGAAGTAA | 873 | 44.67 | MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSYRRTYQRRDLLNRVYASHEERQYAIDRARDLQSSLDSRYPSFVKPMLQSHVTGGFWLGLPVQFCKQHLPREDEMVTLLDEDGNEFQTKYLAEKTGLSGGWRGFAIDHQLVDGDSLVFHLTKPTEFKVYIIRAYNLEDKEDTNEDSDDTQSEKSGQRSTRSSGHKIMANNSEDKSDKCENSEVSQLEKSGKRSTRSASKGKK | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9429577 | 9437894 | + | CmoCh11G013560.1 | Cmo11g01356 | 391975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01356 | 290 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 2 | 231 | IPR044837 | - | |
Cmo11g01356 | 290 | MobiDBLite | consensus disorder prediction | 255 | 282 | - | - | |
Cmo11g01356 | 290 | MobiDBLite | consensus disorder prediction | 228 | 290 | - | - | |
Cmo11g01356 | 290 | MobiDBLite | consensus disorder prediction | 31 | 88 | - | - | |
Cmo11g01356 | 290 | CDD | B3_DNA | 129 | 220 | IPR003340 | GO:0003677 | |
Cmo11g01356 | 290 | Gene3D | - | 105 | 224 | IPR015300 | - | |
Cmo11g01356 | 290 | MobiDBLite | consensus disorder prediction | 32 | 47 | - | - | |
Cmo11g01356 | 290 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 | 2 | 231 | - | - | |
Cmo11g01356 | 290 | SUPERFAMILY | DNA-binding pseudobarrel domain | 124 | 221 | IPR015300 | - | |
Cmo11g01356 | 290 | SMART | B3_2 | 131 | 222 | IPR003340 | GO:0003677 | |
Cmo11g01356 | 290 | ProSiteProfiles | B3 DNA-binding domain profile. | 131 | 222 | IPR003340 | GO:0003677 | |
Cmo11g01356 | 290 | Coils | Coil | 6 | 33 | - | - | |
Cmo11g01356 | 290 | Pfam | B3 DNA binding domain | 131 | 221 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01356 | Cmo-Chr11:9429577 | Cmo12g00470 | Cmo-Chr12:2875151 | 1.34E-67 | dispersed | |
Cmo11g01356 | Cmo-Chr11:9429577 | Cmo19g00628 | Cmo-Chr19:6853976 | 4.66E-156 | wgd | |
Cmo11g01356 | Cmo-Chr11:9429577 | Cmo04g00537 | Cmo-Chr4:2671750 | 5.09E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10620 | PF02362 | B3 | 3.50E-18 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01356 | - | - | bhj:120077841 | 458.759 |