Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01358 ATGCCGATGAACCCAAATCTCCTCGACCTGCAATACAGAGTCTCCAAGAAAAAGTTCCTCCGGGAGCCCTCCCGACTGTTCTCCTTCAAGGACCGGCAGAGCTCCGGCGTCCGGCGGGCTCTGCAACCGAGCACGGAGGAGATCAAGCAGATCTTCAACAAGTTCGACACGAACAGAGACGGGCTGATCTCAAAGCACGAATACAGGGGAGTTCTGAAGGCGCTGGGGAGAGGGAACTCGATGGAGGAGGTGCAGAAGATTTTCAGGGCGGTGGATACCGACGGCGATGGGTACATAAACTTGAATGAGTTCATGGAGGTTCACCGGAGTGGGGACGGAGTTCAGGCGAGAGATGTGGAATTTGCTTTTAAGACGTTTGATTTGAATGGGGATCGGAAGATTAGTGCAGAGGAAATTATGAGAGTGTTGAGGGGATTAGGGGAAAAGTGTAGCATTGAGGATTGCCGGCGGATGGTGAGGGCGGTGGACAGCGACGGCGACGGTATGGTGGACATTGATGAGTTCATGACTATGATGACTCGCTCTGTGATGTAA 555 52.97 MPMNPNLLDLQYRVSKKKFLREPSRLFSFKDRQSSGVRRALQPSTEEIKQIFNKFDTNRDGLISKHEYRGVLKALGRGNSMEEVQKIFRAVDTDGDGYINLNEFMEVHRSGDGVQARDVEFAFKTFDLNGDRKISAEEIMRVLRGLGEKCSIEDCRRMVRAVDSDGDGMVDIDEFMTMMTRSVM 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9443657 9444211 - CmoCh11G013580.1 Cmo11g01358 391977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01358 184 SUPERFAMILY EF-hand 45 181 IPR011992 -
Cmo11g01358 184 Pfam EF-hand domain pair 46 106 IPR002048 GO:0005509
Cmo11g01358 184 Pfam EF-hand domain pair 120 179 IPR002048 GO:0005509
Cmo11g01358 184 Gene3D - 8 112 - -
Cmo11g01358 184 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 8 182 - -
Cmo11g01358 184 CDD EFh 47 109 IPR002048 GO:0005509
Cmo11g01358 184 SMART efh_1 154 182 IPR002048 GO:0005509
Cmo11g01358 184 SMART efh_1 83 111 IPR002048 GO:0005509
Cmo11g01358 184 SMART efh_1 47 75 IPR002048 GO:0005509
Cmo11g01358 184 SMART efh_1 118 146 IPR002048 GO:0005509
Cmo11g01358 184 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Cmo11g01358 184 ProSiteProfiles EF-hand calcium-binding domain profile. 118 149 IPR002048 GO:0005509
Cmo11g01358 184 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Cmo11g01358 184 Gene3D - 113 183 - -
Cmo11g01358 184 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Cmo11g01358 184 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Cmo11g01358 184 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Cmo11g01358 184 ProSiteProfiles EF-hand calcium-binding domain profile. 150 184 IPR002048 GO:0005509
Cmo11g01358 184 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Cmo11g01358 184 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01358 K13448 CML; calcium-binding protein CML - csv:101219869 340.887
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00564 Cmo11g01358 CCT
Cmo11g01358 Cmo19g00627 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00564 Cmo-Chr2:3257479 Cmo11g01358 Cmo-Chr11:9443657 2.33E-42 dispersed
Cmo11g01358 Cmo-Chr11:9443657 Cmo19g00627 Cmo-Chr19:6850031 1.10E-111 dispersed
Cmo15g00657 Cmo-Chr15:3182657 Cmo11g01358 Cmo-Chr11:9443657 3.51E-22 dispersed
Cmo11g01358 Cmo-Chr11:9443657 Cmo15g01026 Cmo-Chr15:6071915 5.58E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012967 0 1 0 0 0 1 1 1 1 0 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01358 Cmo_Chr11 FPKM 12.147908 12.706991 18.750114 18.515903 22.298254 24.995703 22.544237 15.571279 14.050089 13.633947