Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01376 ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTGCCGATCCAGCGGCCAATGGACAGCATGTCACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCGCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACGGATGCATCCGGGCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGATAAGGAGGAAGCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTTGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCGGACGATGCTGCGAGGTCTGTTGAAGAACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTATGCGAGACCCTAACGGAGTGAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAAGCTGCTAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTCTATGTTGCACTCGCGCAGAGGAAGGAAGATAGGAGAGCGAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCGGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCGGGAGGTATGTTCTCTGTTCCATACGAGATGGGTGGTATGCCCCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAATGCAGCTCCAGACCATCAACGAACGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGGTTGATAATGCAGCAAAGGTGACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCGGAGGCTCTGAAAGCCAAGGTGGCGGAGGCTATGGAGGTTTTGAGAACCGTGGGTCAGCAGACAGGCAATCCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATGCCTAA 1938 47.42 MAQVPSPPQVPGADPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVEELNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGVSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNPAADQLASLSLSDNLDA 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9611881 9615897 - CmoCh11G013760.1 Cmo11g01376 391995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01376 645 Gene3D - 289 391 IPR012677 -
Cmo11g01376 645 Pfam Poly-adenylate binding protein, unique domain 555 619 IPR002004 GO:0003723
Cmo11g01376 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Cmo11g01376 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Cmo11g01376 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Cmo11g01376 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Cmo11g01376 645 CDD RRM3_I_PABPs 202 281 - -
Cmo11g01376 645 SUPERFAMILY PABC (PABP) domain 488 637 IPR036053 GO:0003723
Cmo11g01376 645 SMART poly_2 559 622 IPR002004 GO:0003723
Cmo11g01376 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Cmo11g01376 645 Gene3D - 192 288 IPR012677 -
Cmo11g01376 645 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Cmo11g01376 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Cmo11g01376 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Cmo11g01376 645 CDD RRM4_I_PABPs 305 383 - -
Cmo11g01376 645 CDD RRM2_I_PABPs 110 186 IPR045305 -
Cmo11g01376 645 Gene3D - 5 105 IPR012677 -
Cmo11g01376 645 Gene3D - 106 191 IPR012677 -
Cmo11g01376 645 SMART rrm2_1 204 276 IPR003954 GO:0003676
Cmo11g01376 645 SMART rrm2_1 113 185 IPR003954 GO:0003676
Cmo11g01376 645 SMART rrm2_1 307 379 IPR003954 GO:0003676
Cmo11g01376 645 SMART rrm2_1 25 98 IPR003954 GO:0003676
Cmo11g01376 645 PANTHER POLYADENYLATE-BINDING PROTEIN 14 629 - -
Cmo11g01376 645 SUPERFAMILY RNA-binding domain, RBD 203 387 IPR035979 GO:0003676
Cmo11g01376 645 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 620 IPR006515 GO:0003723
Cmo11g01376 645 Gene3D - 542 626 - -
Cmo11g01376 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 184 IPR000504 GO:0003723
Cmo11g01376 645 SMART rrm1_1 113 185 IPR000504 GO:0003723
Cmo11g01376 645 SMART rrm1_1 204 276 IPR000504 GO:0003723
Cmo11g01376 645 SMART rrm1_1 25 98 IPR000504 GO:0003723
Cmo11g01376 645 SMART rrm1_1 307 379 IPR000504 GO:0003723
Cmo11g01376 645 CDD RRM1_I_PABPs 25 104 - -
Cmo11g01376 645 PANTHER RNA BINDING PROTEIN 14 629 - -
Cmo11g01376 645 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 547 624 IPR002004 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01376 Cmo19g00614 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00516 Cmo-Chr4:2557223 Cmo11g01376 Cmo-Chr11:9611881 0 dispersed
Cmo11g01376 Cmo-Chr11:9611881 Cmo15g00576 Cmo-Chr15:2753702 0 dispersed
Cmo11g01376 Cmo-Chr11:9611881 Cmo16g00375 Cmo-Chr16:1721565 0 wgd
Cmo11g01376 Cmo-Chr11:9611881 Cmo19g00614 Cmo-Chr19:6757298 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01376 K13126 - csv:101223017 1110.13