Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01376 | ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTGCCGATCCAGCGGCCAATGGACAGCATGTCACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCGCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACGGATGCATCCGGGCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGATAAGGAGGAAGCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTTGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCGGACGATGCTGCGAGGTCTGTTGAAGAACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTATGCGAGACCCTAACGGAGTGAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAAGCTGCTAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTCTATGTTGCACTCGCGCAGAGGAAGGAAGATAGGAGAGCGAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCGGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCGGGAGGTATGTTCTCTGTTCCATACGAGATGGGTGGTATGCCCCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAATGCAGCTCCAGACCATCAACGAACGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGGTTGATAATGCAGCAAAGGTGACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCGGAGGCTCTGAAAGCCAAGGTGGCGGAGGCTATGGAGGTTTTGAGAACCGTGGGTCAGCAGACAGGCAATCCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATGCCTAA | 1938 | 47.42 | MAQVPSPPQVPGADPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVEELNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGVSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNPAADQLASLSLSDNLDA | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9611881 | 9615897 | - | CmoCh11G013760.1 | Cmo11g01376 | 391995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01376 | 645 | Gene3D | - | 289 | 391 | IPR012677 | - | |
Cmo11g01376 | 645 | Pfam | Poly-adenylate binding protein, unique domain | 555 | 619 | IPR002004 | GO:0003723 | |
Cmo11g01376 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 308 | 376 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 96 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 205 | 273 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 181 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | CDD | RRM3_I_PABPs | 202 | 281 | - | - | |
Cmo11g01376 | 645 | SUPERFAMILY | PABC (PABP) domain | 488 | 637 | IPR036053 | GO:0003723 | |
Cmo11g01376 | 645 | SMART | poly_2 | 559 | 622 | IPR002004 | GO:0003723 | |
Cmo11g01376 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 203 | 280 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | Gene3D | - | 192 | 288 | IPR012677 | - | |
Cmo11g01376 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 193 | IPR035979 | GO:0003676 | |
Cmo11g01376 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 102 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 306 | 383 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | CDD | RRM4_I_PABPs | 305 | 383 | - | - | |
Cmo11g01376 | 645 | CDD | RRM2_I_PABPs | 110 | 186 | IPR045305 | - | |
Cmo11g01376 | 645 | Gene3D | - | 5 | 105 | IPR012677 | - | |
Cmo11g01376 | 645 | Gene3D | - | 106 | 191 | IPR012677 | - | |
Cmo11g01376 | 645 | SMART | rrm2_1 | 204 | 276 | IPR003954 | GO:0003676 | |
Cmo11g01376 | 645 | SMART | rrm2_1 | 113 | 185 | IPR003954 | GO:0003676 | |
Cmo11g01376 | 645 | SMART | rrm2_1 | 307 | 379 | IPR003954 | GO:0003676 | |
Cmo11g01376 | 645 | SMART | rrm2_1 | 25 | 98 | IPR003954 | GO:0003676 | |
Cmo11g01376 | 645 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 14 | 629 | - | - | |
Cmo11g01376 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 203 | 387 | IPR035979 | GO:0003676 | |
Cmo11g01376 | 645 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 25 | 620 | IPR006515 | GO:0003723 | |
Cmo11g01376 | 645 | Gene3D | - | 542 | 626 | - | - | |
Cmo11g01376 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 184 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | SMART | rrm1_1 | 204 | 276 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | SMART | rrm1_1 | 25 | 98 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | SMART | rrm1_1 | 307 | 379 | IPR000504 | GO:0003723 | |
Cmo11g01376 | 645 | CDD | RRM1_I_PABPs | 25 | 104 | - | - | |
Cmo11g01376 | 645 | PANTHER | RNA BINDING PROTEIN | 14 | 629 | - | - | |
Cmo11g01376 | 645 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 547 | 624 | IPR002004 | GO:0003723 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01376 | Cmo19g00614 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00516 | Cmo-Chr4:2557223 | Cmo11g01376 | Cmo-Chr11:9611881 | 0 | dispersed | |
Cmo11g01376 | Cmo-Chr11:9611881 | Cmo15g00576 | Cmo-Chr15:2753702 | 0 | dispersed | |
Cmo11g01376 | Cmo-Chr11:9611881 | Cmo16g00375 | Cmo-Chr16:1721565 | 0 | wgd | |
Cmo11g01376 | Cmo-Chr11:9611881 | Cmo19g00614 | Cmo-Chr19:6757298 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01376 | K13126 | - | csv:101223017 | 1110.13 |