Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01386 ATGGCTCTACACTCACATGAACACACAACCCAGCGCCACCACAACACTCTCTTCTTCCTCCACAGCACACACCAACAGCACCACCAACAACAACAACACCTGCAAACAGAGGACCCCATTTTCCACGACAATGGCGGCACCCACTTTCTGGAACAGACGACCCATTTCGTTGCTTTCGAAGATGAAGAGCTTGGTTCTTTGTTAGCCAAAGAACGAGATCAGAATCTTCAAAACGGCGACGTTTTGGAGCGCTTAATTGAAAGAGACGCAGCTCTGTCTCTGGCTAGAACAGAGGCCATCGAGTGGTTGCTTAAAGTTAATACCTTTTATGGCTTCTCCTCTGTCACCGCTCTCTTAGCCATTAATTACCTCGATCGCATCCTCTCTGGTCCTCATTTTCAAAGAGACAAGCCATGGATGCTACAGCTTCTTGCAGTAACTTGCATCTCTTTAGCAGCCAAAGTCGAAGAAATTCGTGTTCCTCTTCTTCTTGATCTCCAGGTGGAAGATTCAAAGTTCATATTCGAACCAAAAACGATACAAAGAATGGAGCTTTTGGTGCTGAGTGGTCTGAAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTCTTGGCATTGTAACGAAGCGGCTTGGGTTGAAGAATCAGTGCATTGAGAGGGAGTTTTTCCGGCGCTGTGAGCGTATTCTTCTCTCTCTCGTCTCTGATTCGAGATCAGTGGGGTTTCTTCCTTCTGTGATGGCTGTATCGGCAATGGTGAGCGTTGTTGAAGAGATGGGTGACTGTAACTGTTACTGTAACCCATTGGACTTTCAGGATCGCCTTCTTAATGCCCTCAAAATAACCAAGGAAAGATCGAAGAAATGCTGCAATGTGATAAGGGAGGTGACGAAACGGGAAACGAAAGCGAACCGATCGGGAAAGAAGAGGAAGCAGAACGAGGAGGACGAGGCGGAGGAAGAAGAAGACGATGACGAAGAGAGATCAAGAAGATCATTAGAAACCGAAACAGAATCAGAATCAGAAGGAGGAGGAAGCCCAAATGGAGTAATGGAAGGCAATTTCAGCTGTGAAAGCTCCAATGATTCGTGGGGCATAGAAGAAGTCACAGGGTGTTGTTGTTCCAAAAGAACCAAAAGCAGTGAAGAATCATGA 1155 46.41 MALHSHEHTTQRHHNTLFFLHSTHQQHHQQQQHLQTEDPIFHDNGGTHFLEQTTHFVAFEDEELGSLLAKERDQNLQNGDVLERLIERDAALSLARTEAIEWLLKVNTFYGFSSVTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKFIFEPKTIQRMELLVLSGLKWKMHPVTPVSFLGIVTKRLGLKNQCIEREFFRRCERILLSLVSDSRSVGFLPSVMAVSAMVSVVEEMGDCNCYCNPLDFQDRLLNALKITKERSKKCCNVIREVTKRETKANRSGKKRKQNEEDEAEEEEDDDEERSRRSLETETESESEGGGSPNGVMEGNFSCESSNDSWGIEEVTGCCCSKRTKSSEES 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9696714 9699068 + CmoCh11G013860.1 Cmo11g01386 392005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01386 384 CDD CYCLIN 96 188 IPR013763 -
Cmo11g01386 384 Gene3D - 75 290 - -
Cmo11g01386 384 MobiDBLite consensus disorder prediction 301 363 - -
Cmo11g01386 384 Gene3D - 78 196 - -
Cmo11g01386 384 Pfam Cyclin, N-terminal domain 74 195 IPR006671 -
Cmo11g01386 384 SMART cyclin_7 101 189 IPR013763 -
Cmo11g01386 384 SUPERFAMILY Cyclin-like 88 196 IPR036915 -
Cmo11g01386 384 Coils Coil 304 331 - -
Cmo11g01386 384 MobiDBLite consensus disorder prediction 301 315 - -
Cmo11g01386 384 Pfam Cyclin, C-terminal domain 198 316 IPR004367 -
Cmo11g01386 384 PANTHER CYCLINS 46 357 IPR039361 -
Cmo11g01386 384 PANTHER CYCLIN-D3-1 46 357 - -
Cmo11g01386 384 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00511 Cmo11g01386 CCT
Cmo11g01386 Cmo16g00370 CCT
Cmo04g00511 Cmo11g01386 ECH
Cmo11g01386 Cmo16g00370 ECH
Cmo11g01386 Cmo19g00602 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01386 Cmo-Chr11:9696714 Cmo03g00875 Cmo-Chr3:6824498 7.70E-49 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo11g01386 Cmo-Chr11:9696714 2.56E-72 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo12g00510 Cmo-Chr12:3144150 1.20E-70 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo16g00370 Cmo-Chr16:1697863 1.45E-89 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo19g00602 Cmo-Chr19:6691342 1.30E-153 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo04g00511 Cmo-Chr4:2537126 7.26E-82 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo05g00163 Cmo-Chr5:696188 7.36E-70 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo07g00695 Cmo-Chr7:3141146 5.89E-71 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo09g00254 Cmo-Chr9:1141404 4.01E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01386 K14505 - csv:101222066 424.861