Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01388 ATGGATCTCCGATTACCTTTTCTCCTCTTCCTTTTCTTGCAGGCCGTTTCCGGCCTCCTCCTCGCCGCTGCGTCCAACGTTGCCTACCCCTCCGTCGTCGATACTGGAGTCGGTGATTGCTCAGTTTCCGACGGCGGCGATGGCAGCCTCACTCCTATCCGTCGAGAAGTTTACGATAATGGACGAATCATTGACATTAGTCATCGGTTTACTGTGGATATGCCGTCTTGGGAATCTGACGAAGGGCTTGGCCAGTTTCTGTGGCTTCCGAAGAGCATGAAGAATGGTTCGCTTGCTAATAACTCTGAAATGAAGCTTCCGGCTCACACTGGCACGCACGTCGATGCGCCTGGTCATGTTTTTGATCATTACTTTGATGCGGGATTCGATGTTGACACACTCGACTTGGGAGTCCTCAATGGTATTGATTCTCTACTAATCTTTGGTTTTCTTCGGTGTGGTTTTGTTGAACTTTTTGAATTTGTGGCTTTGATTCCATGGATCTATTTTAAACTGAAGCCTGTCCTGGACTGTTGGTTGACGTTCCAAGGGATAAGAACATTACTGGTACGCATTGCAAGCGTTCTTCATTACTTTTCTTGCTTCTTTACACGGCATCTTCAATGTCTGCAGATATGTATGTTCCCTAACTCTAACCCATCTGGTAGACCATGTGGATATATTTTGCAATTTTTTCTAAATTACGTTCTATCTACCAAAAACGAACAATTCTTAAATGGGCGTTTAAACAATTTTTGGTTTTTTGTTGTTGCAGCTGAAGTCATGAAGTCTTTGAACATTCCCAAAGGAGTGCGCCGTGTACTCTTCAGAACATTAAATACTGACAGAGGTCTCATGTGGAAAAAGGAGTTTGACACGAGCTATGTTGGATTTATGAAGGATGGAGCAAAATGGCTTGTAGACAACACTGATATCAAACTAGTTGGTGAGAGAACGCTCAATGATTCAACTAACGGCTCCTTCTATCATGCAGGAATTGACTACTTATCAGTTGCTGCCTTTGATGATCTTATTCCGTCTCATCTCGAATTTTTAGAAGGCAGGGAAACCATTCTTGTCGAAGGCTTAAAGCTTGATGGCGTCCAGCCGGGATTATATTCGATTCATTGCTTACCTCTTAGGTTGCTTGGCGCCGAGGGGTCGCCAATCAGATGCATTCTAATCAAGTAG 1191 44.16 MDLRLPFLLFLFLQAVSGLLLAAASNVAYPSVVDTGVGDCSVSDGGDGSLTPIRREVYDNGRIIDISHRFTVDMPSWESDEGLGQFLWLPKSMKNGSLANNSEMKLPAHTGTHVDAPGHVFDHYFDAGFDVDTLDLGVLNGIDSLLIFGFLRCGFVELFEFVALIPWIYFKLKPVLDCWLTFQGIRTLLVRIASVLHYFSCFFTRHLQCLQICMFPNSNPSGRPCGYILQFFLNYVLSTKNEQFLNGRLNNFWFFVVAAEVMKSLNIPKGVRRVLFRTLNTDRGLMWKKEFDTSYVGFMKDGAKWLVDNTDIKLVGERTLNDSTNGSFYHAGIDYLSVAAFDDLIPSHLEFLEGRETILVEGLKLDGVQPGLYSIHCLPLRLLGAEGSPIRCILIK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9721806 9725244 - CmoCh11G013880.1 Cmo11g01388 392007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01388 396 SUPERFAMILY Putative cyclase 62 395 IPR037175 GO:0004061|GO:0019441
Cmo11g01388 396 Pfam Putative cyclase 64 127 IPR007325 GO:0004061|GO:0019441
Cmo11g01388 396 Gene3D Putative cyclase 236 395 IPR037175 GO:0004061|GO:0019441
Cmo11g01388 396 Gene3D Putative cyclase 51 147 IPR037175 GO:0004061|GO:0019441
Cmo11g01388 396 PANTHER CYCLASE-LIKE PROTEIN 2 8 396 IPR007325 GO:0004061|GO:0019441
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01388 - - - cpep:111792809 263.848
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g613 . . . . . . . . . Cmo11g01388 . . . . . Cpe04g00300 . . . . . . . . Cla02g00629 Cam02g0663 Cec02g0667 Cco02g0691 Clacu02g0671 Cmu02g0665 Cre02g0984 . . . . Lsi03g00526 Csa07g00729 . Cme01g00079 . . . Bda14g01456 . . Bma03g01359 . . . . . . Car11g01114 . . . . . . . . . . . . . . . . . Lsi03g01043 . Chy01g00085 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002722 3 2 2 2 2 2 1 2 2 2 1 2 0 2 2 1 2 2 1 2 2 2 2 2 2 1 2 3 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01388 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.129584 0.0 0.290092 0.172897 0.108278