Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01399 ATGGACGCGTCGGAGTACCTCAACCCCTCCGTCCGAACTTCGAAGAAGCGCGACTTAGAGGATCAATCTCTGCAACTGGCCTCCGCCAATAAGAGAGTGGCGCTTGGCGAGATCACCAACTCGTTGATCTTCAATACCAGACAGTGCTCGCTTTCTGATCAGGAGATGACGGATAAGGATATGGACGAGGAAGAACGTCCCGATGGAACCTCTGTTGATTGTTCGAAGAAGTGTCGTTCTGCATCTAGCATCTATAACCACCTTCGATCTCTGGAGATGGAACTGCACATGAAGGTACTGCCCAATAACATCGTAAAGGCTCAAAATGGTGATTCCATTTTAAGTTTCACTTATATGCGAGAAATTCTTGTGGATTGGTTAGTAGAGGTTGCTGAAGAATACAAGCTTGTATCGGACACCCTATATCTCACCATATCACATATGGACATATACTTATCCTCGCAAGCTGTTGACAAAAGCAAGCTGCAGCTTCTTGGTGTTTGTTGCATGCTTCTTGCATCAAAGTATGAAGAGATCAATCCTCCAAATGTTGAAGACTTCTGCTATATAACAGACAATACATATACCAAAGAACAGGCTCCAGACTTGCAATTCGAGTTTTTGAGTTGTTACCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGCACAGTTCTTACCATCAATGGTCGCTGCATCAGCTATTTTTCTTTCTAGATTCACAATTCAACCAGATAAACATCCTTGGTGTTTAGCGCTGCAACATTACTCCGGTTACAGACCATCTGAACTGAAGGAATGCATTCTTGCCATTCATCGCTTGCAATTAAATAGAAAAGGAAGCTCATTACAAGCAATAAGAACCAAGTATAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCTCCCTCAGAAATTCCTGCATATTACTTTGAGGACATTGACAAGCAATCATTCAACAGGTTCTTGAGAACTTAA 981 42.61 MDASEYLNPSVRTSKKRDLEDQSLQLASANKRVALGEITNSLIFNTRQCSLSDQEMTDKDMDEEERPDGTSVDCSKKCRSASSIYNHLRSLEMELHMKVLPNNIVKAQNGDSILSFTYMREILVDWLVEVAEEYKLVSDTLYLTISHMDIYLSSQAVDKSKLQLLGVCCMLLASKYEEINPPNVEDFCYITDNTYTKEQAPDLQFEFLSCYLAELSLLDHRFAQFLPSMVAASAIFLSRFTIQPDKHPWCLALQHYSGYRPSELKECILAIHRLQLNRKGSSLQAIRTKYKQHKFKCVAELSSPSEIPAYYFEDIDKQSFNRFLRT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9837969 9841249 - CmoCh11G013990.1 Cmo11g01399 392018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01399 326 CDD CYCLIN 119 198 IPR013763 -
Cmo11g01399 326 PANTHER CYCLIN-A3-1-LIKE 203 314 - -
Cmo11g01399 326 PANTHER CYCLIN-A3-1-LIKE 26 200 - -
Cmo11g01399 326 Pfam Cyclin, C-terminal domain 198 303 IPR004367 -
Cmo11g01399 326 Gene3D - 84 96 - -
Cmo11g01399 326 Gene3D - 202 300 - -
Cmo11g01399 326 PANTHER CYCLINS 26 200 IPR039361 -
Cmo11g01399 326 PANTHER CYCLINS 203 314 IPR039361 -
Cmo11g01399 326 SMART cyclin_7 125 193 IPR013763 -
Cmo11g01399 326 SMART cyclin_7 194 273 IPR013763 -
Cmo11g01399 326 SUPERFAMILY Cyclin-like 83 204 IPR036915 -
Cmo11g01399 326 Gene3D - 97 199 - -
Cmo11g01399 326 MobiDBLite consensus disorder prediction 53 74 - -
Cmo11g01399 326 CDD CYCLIN 195 272 IPR013763 -
Cmo11g01399 326 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 259 326 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo11g01399 326 SUPERFAMILY Cyclin-like 194 305 IPR036915 -
Cmo11g01399 326 SMART Cyclin_C_2 182 304 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01399 K06627 CCNA; cyclin-A - csv:101213896 494.582
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01399 Cmo19g00580 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01399 Cmo-Chr11:9837969 Cmo04g02500 Cmo-Chr4:18395584 5.92E-71 dispersed
Cmo19g00580 Cmo-Chr19:6571314 Cmo11g01399 Cmo-Chr11:9837969 1.10E-177 transposed
Cmo01g01859 Cmo-Chr1:13520996 Cmo11g01399 Cmo-Chr11:9837969 1.88E-92 wgd
Cmo11g01399 Cmo-Chr11:9837969 Cmo12g00518 Cmo-Chr12:3185191 2.76E-85 wgd
Cmo11g01399 Cmo-Chr11:9837969 Cmo05g00159 Cmo-Chr5:686871 6.91E-89 wgd
Cmo11g01399 Cmo-Chr11:9837969 Cmo09g00266 Cmo-Chr9:1172689 9.86E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g655 . . . . . . . . Cmo19g00580 Cmo11g01399 . . . . . Cpe04g00309 Cpe15g00455 Bhi05g01057 Tan02g1772 . Lac12g0195 . . . Cla02g00659 Cam02g0694 Cec02g0707 Cco02g0726 Clacu02g0700 Cmu02g0698 Cre02g1013 . . . . Lsi03g00554 Csa07g00705 . Cme01g00101 . . . . . . . . . . . Cma11g01716 Cma19g00567 Car11g01125 Car19g00427 . . . . . . . . . . . . . . . . . . Chy01g00109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012970 0 2 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01399 Cmo_Chr11 FPKM 0.50303 0.0 71.507118 69.71595 0.0 0.640486 0.0 5.170902 4.632574 4.893273