Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01407 ATGAAAAGGGCAGGTTTTGTGGCTGAGAGGGACACTTTCAACACTCTAATAAGCGCTTATAGTAGATGTGGTTTGTTCGACCAAGCCATGGCTATCTATCGAAGAATGTTGGATGCTGCGTTTGCTCCCGATCTGCCGATGTACAATACTGTTTTAGCAGCCTTGGCTCGGGGAGGCCTTTGGGAGCAGTCGGAGATAGTGCTCGCCGAAATGAAGAACGGTCGGTGTAAACCTAACGAGTTAACATATTGTTCTTTACTTCATGCTTATGCCAATGGCAAAGATATCCGGCGGATGTCTGCACTTGCTGAGGAAATCCATGCCAGCATTATTGAACCTCAAGCTGTGCTTTTGAAGACATTGGTTTTGGTTTATAGTAAAAGCGATCTTTTGATGGAGACCGAGCGTGCTTTCTTCGAACTTAGGAAGCACGGTTTTTCGCCTGATTTAAGGACTCTAAATGCCATGGTTTCGATCTATGGTAGGAGAAGGATGGTTTTGAAAACCAACGAAATTTTAAACTTCATGAAGGATAGCGGATATACTCCGAGCTTGACTACTTATAATAGCCTAATGTACATGTACAGTCGCTCGGAGAACTTCGACAAGTCGGAGGAGATTTTGAGGGAAATTATTGGGAAAGGAATAAAGCCTGATATCATTTTGTTTAATACCGTTATTTTCGCCTATTGTCGGAATGGTCAAATGAAAGAGGCGTCGAGGATATTTGGTGAAATGAAGGATTTCTGGCTTGTCCCAGATGTAATTACGTATAATACCTTCAATGCAAGCTATGCTGCTGACTCGATGTTTGTAGAGGCGATCGATGTGGTGAGCTATACGATCAAGAATGGATGTAAGCCTAATCCGAACACATACAACTCTCTAGTAGACTCGTTTTGTAAACTAAATCACTGGGAGGATGCAAATAGTTTCGTCTCAAACCTTTGCAATCTCGACCCACACATAACGAAAGAAGAGAAACGCAGGTTGCTGAAGCATATAAGCAAAAAAAAGAAATGGTCATAG 1029 42.37 MKRAGFVAERDTFNTLISAYSRCGLFDQAMAIYRRMLDAAFAPDLPMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGKDIRRMSALAEEIHASIIEPQAVLLKTLVLVYSKSDLLMETERAFFELRKHGFSPDLRTLNAMVSIYGRRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENFDKSEEILREIIGKGIKPDIILFNTVIFAYCRNGQMKEASRIFGEMKDFWLVPDVITYNTFNASYAADSMFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLDPHITKEEKRRLLKHISKKKKWS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9895617 9896645 + CmoCh11G014070.1 Cmo11g01407 392026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01407 342 Pfam PPR repeat 214 247 IPR002885 -
Cmo11g01407 342 PANTHER OS03G0856100 PROTEIN 1 335 - -
Cmo11g01407 342 Pfam Pentatricopeptide repeat domain 140 195 IPR002885 -
Cmo11g01407 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Cmo11g01407 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Cmo11g01407 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Cmo11g01407 342 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Cmo11g01407 342 TIGRFAM PPR: pentatricopeptide repeat domain 12 44 IPR002885 -
Cmo11g01407 342 TIGRFAM PPR: pentatricopeptide repeat domain 292 312 IPR002885 -
Cmo11g01407 342 TIGRFAM PPR: pentatricopeptide repeat domain 47 80 IPR002885 -
Cmo11g01407 342 TIGRFAM PPR: pentatricopeptide repeat domain 152 184 IPR002885 -
Cmo11g01407 342 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Cmo11g01407 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Cmo11g01407 342 PANTHER - 1 335 - -
Cmo11g01407 342 Gene3D Tetratricopeptide repeat domain 166 342 IPR011990 GO:0005515
Cmo11g01407 342 Gene3D Tetratricopeptide repeat domain 1 129 IPR011990 GO:0005515
Cmo11g01407 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Cmo11g01407 342 Pfam PPR repeat family 43 92 IPR002885 -
Cmo11g01407 342 Pfam PPR repeat family 253 302 IPR002885 -
Cmo11g01407 342 Pfam PPR repeat 12 38 IPR002885 -
Cmo11g01407 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01407 - - - csv:101213418 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01407 Cmo-Chr11:9895617 Cmo12g00896 Cmo-Chr12:8214897 1.62E-17 dispersed
Cmo11g01407 Cmo-Chr11:9895617 Cmo19g00578 Cmo-Chr19:6565111 1.11E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g669 . . . . . . . . . Cmo11g01407 . . . . . Cpe04g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g01710 . Car11g01132 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029601 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01407 Cmo_Chr11 FPKM 0.092409 0.0 1.461258 1.178469 1.128234 0.877033 1.439898 0.0 0.0 0.0