Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01416 ATGGCGACTTCTTCACCTCTTCATATCTCTGCTACGCCGTCGTTGGCCGTCGGCAGCTCAAAGTCATCATTTCTTTTCGGTACCCATCTCCCTTTCCCCTCCTCTCGCCCAAGAACTTCATATCGCAGATACTTTTTTTCTCCCTCTGCCAAAAAATCGATGGACCACATTCCTAAGCAATTCAGAGAAGAGAATCTCAAAGATGGCTTGATGGAGAACTACGAGAACGTTCCTCAATCACTTTATGGCCTTACACCTTCACAACTGGACATGTTCATGACAGAAGATAATCCTGTCAGGCGACAGTCAGAATTAGTTACTGAGGAAAGCATCTCATCCGCCCACAGCTATTTGACTAATGGTGGAATGTGGAGTCTATCAGGCATGGATGGAAAAAAGGGTCCATCAAAATATAGTATGAGCGCTAGTATGTATCGTGGGGGAGGAAGGGGATATGGGCGACGCCAATCAGCTCCTCCTGATTTGCCTTCTTTGCTCTTGGACGCTCGTATAGTCTATTTGGGCATGCCCATCGTACCAGCAGTGACTGAGCTTCTTGTTGCTCAGTTTATGTGGCTAGACTATGATAACCCATCAAAGCCTATATATCTCTACATAAACTCTCCGGGGACGCAGAATGAGAAGATGGAGAATGTTGGATTCGAAACTGAAGCATATGCTATAGCAGATATGATGGCTTATTGCAAACCGGATGTCTATACTATAAACTGCGGAATGGCATTCGGTCAAGCAGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTGTCCAGCCTAACTCCTCCGCTAAACTGTATCTGCCTAAAGTTAGTAGATCAAGTGGTGCGGTCATAGATATGTGGATTAAGGCCAGAGAACTCGATGCCAACACCGATTACTATATCGAGCTATTAGCTAAAGGAACTGGTAAACCCGCGGAAGAGATTGCTAAAGATATTCAACGACCCAAGTACTTCAATCCCCAAGAAGCCATTGACTATGGCCTTGTAGACAAGATAATCAGCTCGCGGGATTCTGCCTTCGAAAAGAGGAACTACGACGATATGCTTGCGCAGTCGAGAGCCATGAGGAAAGGAGCCGGAGGCAATCCACAAGCCGCGCCATCCGGGTTGAGGTAA 1143 46.54 MATSSPLHISATPSLAVGSSKSSFLFGTHLPFPSSRPRTSYRRYFFSPSAKKSMDHIPKQFREENLKDGLMENYENVPQSLYGLTPSQLDMFMTEDNPVRRQSELVTEESISSAHSYLTNGGMWSLSGMDGKKGPSKYSMSASMYRGGGRGYGRRQSAPPDLPSLLLDARIVYLGMPIVPAVTELLVAQFMWLDYDNPSKPIYLYINSPGTQNEKMENVGFETEAYAIADMMAYCKPDVYTINCGMAFGQAAMLLSLGTKGYRAVQPNSSAKLYLPKVSRSSGAVIDMWIKARELDANTDYYIELLAKGTGKPAEEIAKDIQRPKYFNPQEAIDYGLVDKIISSRDSAFEKRNYDDMLAQSRAMRKGAGGNPQAAPSGLR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9957496 9961908 + CmoCh11G014160.1 Cmo11g01416 392035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01416 380 MobiDBLite consensus disorder prediction 360 380 - -
Cmo11g01416 380 Pfam Clp protease 162 344 IPR023562 -
Cmo11g01416 380 SUPERFAMILY ClpP/crotonase 155 346 IPR029045 -
Cmo11g01416 380 PRINTS Clp protease catalytic subunit P signature 161 176 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo11g01416 380 PRINTS Clp protease catalytic subunit P signature 201 221 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo11g01416 380 PRINTS Clp protease catalytic subunit P signature 241 258 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo11g01416 380 PRINTS Clp protease catalytic subunit P signature 320 339 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo11g01416 380 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 46 369 - -
Cmo11g01416 380 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 369 IPR023562 -
Cmo11g01416 380 Gene3D - 150 349 - -
Cmo11g01416 380 CDD S14_ClpP_2 161 341 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01416 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - mnt:21387209 560.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01137 Cmo-Chr5:9050966 Cmo11g01416 Cmo-Chr11:9957496 3.19E-54 dispersed
Cmo11g01416 Cmo-Chr11:9957496 Cmo06g00606 Cmo-Chr6:2982870 5.45E-32 dispersed
Cmo11g01416 Cmo-Chr11:9957496 Cmo06g00836 Cmo-Chr6:4605041 5.35E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01416 Cmo_Chr11 FPKM 14.283951 14.310424 11.063258 13.790936 10.767692 10.179986 9.447803 4.351345 5.014564 5.590036