Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01418 ATGTCTCATATGTTTTGCCATACCGGTCCAACTTTGTTTCATCACAGCGTCTCCGCGCCGGTCACTGCAATGGTGGTCTGCAAATGCCGCAAGGCCACGAAGTTGTATTGTTTTGTTCATAAGGTTCCCGTATGTGGAGAATGCATATGTTTCCCAGAACACCAAATATGCGTGATTCGCACCTATTCAGAGTGGGTATTGAATGGAGATTATGATTGGCCTCCAAATTGCTGCCTGTGTCATGCTACACTTGAGGAAGGAACTGGTCCTCAAACTACTCGATTGGGATGCTTGCATGTTATACATACGGATTGCTTGGTCTCACATATCAAGAGCTTTCCTCCATCCACTGCCCCTGCTGGCTATGACTGTCCCGCCTGTTCCATTTCGATATGGCCTCCGAAGAACATTAAAGATTCAGGATCTCGCCTACACGCAAAGCTAAAGGAAGCTATCTTGCAGACTGGTCTGGAAAAGAGTTTGTTTGGAAATCATCCAGTAGGATTATCAGCAACAGAATCCCATGGGCCTCCCCCTGCCTTTGCCTCAGATCCCTTGGTTTCCTCTTCAGGAGATGCACATAACAATAAGAGCTCATTAAATTCAATAGCAAACGTTGTCTCAAATACGGGTGAAGGATTCTCAGCCACAACTGGAGCTGGATCTTCCAAAAATAACATTTCAGATATTGTTGAGATTGAAATTCCTGGTCCAGAAGGGAATTTTGTGAAAGGCTCAAGTCCTTCAGCCCCTGTTGCCACCACAAGAAAGGGTGCAATCAATTATGACAGGCAAAGTTCTGAAATTTCGTATTATGCTGATGATGAAGATGGTAATCGCAAGAAGTACGTTCGAAGAGGTCCTTTTAGGCACAAGTTTCTTAGAGCGCTACTTCCTTTCTGGTCGACAGCATTGCCAACCCTACCCGTGACTGCGCCTCCACGTAAAGATTCATTGGGTGCCAATGATGTCAGTGAAGGCCGTGTTCGGCACCAAAGACCCTCCAGAATGGATCCCAGAAAAATTCTTCTTGTCATAGCAATCATGGCATGTCTGGCAACCATGGGTATTTTGTACTACAGACTTGCACAAAGAGGTATAGGGGAAGAAGTTGTGGATGACGAGCAGCAACTGAAAGCAGCACAATGA 1149 45.69 MSHMFCHTGPTLFHHSVSAPVTAMVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVLNGDYDWPPNCCLCHATLEEGTGPQTTRLGCLHVIHTDCLVSHIKSFPPSTAPAGYDCPACSISIWPPKNIKDSGSRLHAKLKEAILQTGLEKSLFGNHPVGLSATESHGPPPAFASDPLVSSSGDAHNNKSSLNSIANVVSNTGEGFSATTGAGSSKNNISDIVEIEIPGPEGNFVKGSSPSAPVATTRKGAINYDRQSSEISYYADDEDGNRKKYVRRGPFRHKFLRALLPFWSTALPTLPVTAPPRKDSLGANDVSEGRVRHQRPSRMDPRKILLVIAIMACLATMGILYYRLAQRGIGEEVVDDEQQLKAAQ 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9961919 9974251 + CmoCh11G014180.1 Cmo11g01418 392037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01418 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 161 IPR013083 -
Cmo11g01418 382 MobiDBLite consensus disorder prediction 168 195 - -
Cmo11g01418 382 ProSiteProfiles Zinc finger RING-type profile. 77 128 IPR001841 -
Cmo11g01418 382 SUPERFAMILY RING/U-box 60 141 - -
Cmo11g01418 382 MobiDBLite consensus disorder prediction 312 333 - -
Cmo11g01418 382 PANTHER ZINC FINGER PROTEIN-LIKE 1 24 376 IPR039043 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01418 - - - csv:101215656 674.855
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01418 Cmo19g00569 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01418 Cmo-Chr11:9961919 Cmo19g00569 Cmo-Chr19:6512806 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g697 . . . . . . . . Cmo19g00569 Cmo11g01418 . . . . . Cpe04g00325 Cpe15g00443 Bhi05g01042 . . . . . . Cla02g00678 Cam02g0711 Cec02g0724 Cco02g0746 Clacu02g0720 Cmu02g0717 Cre02g1030 Cone12ag1049 Cone8ag1081 . . Lsi03g00572 Csa07g00688 . Cme01g00117 . . . . . . . . . . . . Cma19g00556 Car11g01141 Car19g00414 . . . . . . . . . . . . . . . . . . Chy01g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008279 1 1 2 3 1 0 2 1 0 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01418 Cmo_Chr11 FPKM 11.311073 12.068866 31.677486 30.302338 16.630074 18.465525 17.918428 100.114662 104.715492 106.671661