Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01419 | ATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAACGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACCGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACTCCATGAACTTTTGCTTGGGAGAGCTTGGAAATGATAACAATGGTGGTTTCAATCTTGAAGAGGAGGACTCCAATTTGCAGTCATGTTATGAAGCTGAGTTGATGAAATTACCTGAAGAAGAAGCTGCCATGGAACAAAAGAGGCATACCCAGCTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGGGATAAAACTCAGAAGCTTACCTCAAGCAGCAACACTGAAGAAAATGGCAATGCTGTTCATAGCAAGCAAAGCACAAGCAACTATTGCTCGGAAGATGAATCCAAGGCCTCGTTCGAGCTGAATAACTCGAGATCGAATCCGAAAGAGACGACCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTACGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCGGATGATTTGTGGATGTATGCTCCGATCGCCTATAACGGAATGGATATCGGGCTTAATCGATCCCCGAACACGTCAAAAGAATTATGA | 798 | 43.36 | MEQLRGPIVEDGDQWSSLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNSMNFCLGELGNDNNGGFNLEEEDSNLQSCYEAELMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDKTQKLTSSSNTEENGNAVHSKQSTSNYCSEDESKASFELNNSRSNPKETTKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRSPNTSKEL | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9982115 | 9983817 | + | CmoCh11G014190.1 | Cmo11g01419 | 392038 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01419 | 265 | PANTHER | TRANSCRIPTION FACTOR BHLH139-LIKE | 60 | 260 | - | - | |
Cmo11g01419 | 265 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 60 | 260 | - | - | |
Cmo11g01419 | 265 | Pfam | Helix-loop-helix DNA-binding domain | 189 | 229 | IPR011598 | GO:0046983 | |
Cmo11g01419 | 265 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 179 | 245 | IPR036638 | GO:0046983 | |
Cmo11g01419 | 265 | SMART | finulus | 185 | 234 | IPR011598 | GO:0046983 | |
Cmo11g01419 | 265 | MobiDBLite | consensus disorder prediction | 98 | 117 | - | - | |
Cmo11g01419 | 265 | MobiDBLite | consensus disorder prediction | 123 | 183 | - | - | |
Cmo11g01419 | 265 | Gene3D | - | 181 | 237 | IPR036638 | GO:0046983 | |
Cmo11g01419 | 265 | CDD | bHLH_AtIND_like | 180 | 242 | - | - | |
Cmo11g01419 | 265 | MobiDBLite | consensus disorder prediction | 98 | 191 | - | - | |
Cmo11g01419 | 265 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 179 | 228 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01419 | Cmo16g00342 | CCT | |
Cmo11g01419 | Cmo16g00342 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01419 | Cmo-Chr11:9982115 | Cmo15g00764 | Cmo-Chr15:3751026 | 1.73E-26 | dispersed | |
Cmo11g01419 | Cmo-Chr11:9982115 | Cmo16g00342 | Cmo-Chr16:1580268 | 6.67E-37 | wgd | |
Cmo11g01419 | Cmo-Chr11:9982115 | Cmo04g00483 | Cmo-Chr4:2409281 | 1.50E-52 | wgd | |
Cmo11g01419 | Cmo-Chr11:9982115 | Cmo05g00146 | Cmo-Chr5:642861 | 6.04E-52 | wgd | |
Cmo11g01419 | Cmo-Chr11:9982115 | Cmo09g00277 | Cmo-Chr9:1225906 | 8.50E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10626 | PF00010 | HLH | 2.00E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01419 | - | - | mcha:111017406 | 284.263 |