Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01419 ATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAACGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACCGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACTCCATGAACTTTTGCTTGGGAGAGCTTGGAAATGATAACAATGGTGGTTTCAATCTTGAAGAGGAGGACTCCAATTTGCAGTCATGTTATGAAGCTGAGTTGATGAAATTACCTGAAGAAGAAGCTGCCATGGAACAAAAGAGGCATACCCAGCTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGGGATAAAACTCAGAAGCTTACCTCAAGCAGCAACACTGAAGAAAATGGCAATGCTGTTCATAGCAAGCAAAGCACAAGCAACTATTGCTCGGAAGATGAATCCAAGGCCTCGTTCGAGCTGAATAACTCGAGATCGAATCCGAAAGAGACGACCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTACGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCGGATGATTTGTGGATGTATGCTCCGATCGCCTATAACGGAATGGATATCGGGCTTAATCGATCCCCGAACACGTCAAAAGAATTATGA 798 43.36 MEQLRGPIVEDGDQWSSLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNSMNFCLGELGNDNNGGFNLEEEDSNLQSCYEAELMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDKTQKLTSSSNTEENGNAVHSKQSTSNYCSEDESKASFELNNSRSNPKETTKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRSPNTSKEL 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9982115 9983817 + CmoCh11G014190.1 Cmo11g01419 392038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01419 265 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 60 260 - -
Cmo11g01419 265 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 260 - -
Cmo11g01419 265 Pfam Helix-loop-helix DNA-binding domain 189 229 IPR011598 GO:0046983
Cmo11g01419 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 245 IPR036638 GO:0046983
Cmo11g01419 265 SMART finulus 185 234 IPR011598 GO:0046983
Cmo11g01419 265 MobiDBLite consensus disorder prediction 98 117 - -
Cmo11g01419 265 MobiDBLite consensus disorder prediction 123 183 - -
Cmo11g01419 265 Gene3D - 181 237 IPR036638 GO:0046983
Cmo11g01419 265 CDD bHLH_AtIND_like 180 242 - -
Cmo11g01419 265 MobiDBLite consensus disorder prediction 98 191 - -
Cmo11g01419 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01419 Cmo16g00342 CCT
Cmo11g01419 Cmo16g00342 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01419 Cmo-Chr11:9982115 Cmo15g00764 Cmo-Chr15:3751026 1.73E-26 dispersed
Cmo11g01419 Cmo-Chr11:9982115 Cmo16g00342 Cmo-Chr16:1580268 6.67E-37 wgd
Cmo11g01419 Cmo-Chr11:9982115 Cmo04g00483 Cmo-Chr4:2409281 1.50E-52 wgd
Cmo11g01419 Cmo-Chr11:9982115 Cmo05g00146 Cmo-Chr5:642861 6.04E-52 wgd
Cmo11g01419 Cmo-Chr11:9982115 Cmo09g00277 Cmo-Chr9:1225906 8.50E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10626 PF00010 HLH 2.00E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01419 - - mcha:111017406 284.263