Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01434 ATGGGGCTAGTCCTAGTCCCCATCACCCTCGCTCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCTCGATCAAGGGTCGGGGTCGGGCCAGTCTCTTGGAACTACACCTTAGCTGCATATGCCCAAACTTATGCCAACAAGAAGATTGGCACTTGTAAGATGCAACATTCTTATGGCCCTTATGGCGAGAATCTAGCCGAAGGGTACGGCGAGATGACTGCAGTCGAGGCAGTGAACTTTTGGGTGAGCGAGAAGAAATACTACGATCACCGGTTGAACCGATGCGTCGGAGATGAGTGTGGCCATTACACGCAGGTGGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGCCGCAACAATTGGATTTTTGTTATATGTAGCTATGATCCTCCGGGCAATTATATTCCATCATATGAAATGCTGGGTATCCCAAAGCACGAGGAAATACCTTTGGTGCCACAACTGCCTCTCTCTGTAATGGGCGATGCTTGTTCTCGAGTGGACCTAACAGCCATTCATCAGCTTTTGCTCGTGTCACATTATAAGGATGATGATGGATCCTGCGAACTGTCCTTCCAAGAATGGACTCAACAGATTCGAGATATGTTGGAGGCGCGTAAGCGAGGCGACATGGCATTTCGAGATAAAAATTTTATAGAGGCAATAGACGGCTATACTACGTTCATTGACGTAGGAAATATAGTATCTCCAACAGTCTACGCGCGAAGAAGTATTTGTTATCTGCTGTGTGATAAACCAGATGCAGCACTTAGAGATGCCATGCAAGCACAATTGGCTCACCCTGAGTGGCCGACTGCATTTTACTTGCAGGCCGTTGCCCTTGTTAAGCTCGGAATGCACAAGGATGCAGCTGACATGTTGAATGAGGCATCAACATTAGAGAAGAAAAGGCATAATAGAGGTAGCAGAGGGTATTGA 960 47.71 MGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTYANKKIGTCKMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRLNRCVGDECGHYTQVVWRNTKHVGCARVKCRNNWIFVICSYDPPGNYIPSYEMLGIPKHEEIPLVPQLPLSVMGDACSRVDLTAIHQLLLVSHYKDDDGSCELSFQEWTQQIRDMLEARKRGDMAFRDKNFIEAIDGYTTFIDVGNIVSPTVYARRSICYLLCDKPDAALRDAMQAQLAHPEWPTAFYLQAVALVKLGMHKDAADMLNEASTLEKKRHNRGSRGY 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10092788 10097388 - CmoCh11G014340.1 Cmo11g01434 392053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01434 319 ProSitePatterns CRISP family signature 2. 130 141 IPR018244 GO:0005576
Cmo11g01434 319 ProSitePatterns CRISP family signature 1. 104 114 IPR018244 GO:0005576
Cmo11g01434 319 CDD CAP_PR-1 16 142 - -
Cmo11g01434 319 Pfam Cysteine-rich secretory protein family 19 135 IPR014044 -
Cmo11g01434 319 SUPERFAMILY PR-1-like 5 144 IPR035940 -
Cmo11g01434 319 SMART SCP_3 13 143 IPR014044 -
Cmo11g01434 319 Gene3D CAP 8 148 IPR035940 -
Cmo11g01434 319 Gene3D Tetratricopeptide repeat domain 207 316 IPR011990 GO:0005515
Cmo11g01434 319 PRINTS Allergen V5/Tpx-1 family signature 103 119 IPR001283 -
Cmo11g01434 319 PRINTS Allergen V5/Tpx-1 family signature 34 52 IPR001283 -
Cmo11g01434 319 PRINTS Allergen V5/Tpx-1 family signature 80 93 IPR001283 -
Cmo11g01434 319 PRINTS Allergen V5/Tpx-1 family signature 130 143 IPR001283 -
Cmo11g01434 319 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 142 314 - -
Cmo11g01434 319 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 142 314 IPR045845 GO:0004672|GO:0009742
Cmo11g01434 319 SUPERFAMILY TPR-like 210 311 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01434 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - cmos:111434610 354.755
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00453 Cmo11g01434 CCT
Cmo11g01434 Cmo19g00538 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01434 Cmo-Chr11:10092788 Cmo09g00065 Cmo-Chr9:296581 3.54E-128 dispersed
Cmo19g00539 Cmo-Chr19:6268046 Cmo11g01434 Cmo-Chr11:10092788 1.35E-44 dispersed
Cmo11g01432 Cmo-Chr11:10088725 Cmo11g01434 Cmo-Chr11:10092788 8.31E-51 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01434 Cmo_Chr11 FPKM 1.164049 0.41722 19.41684 17.160187 171.538727 146.244431 165.617722 10.401563 11.340545 9.107498