Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01441 ATGTATGACCATCTCGGGGTGCTAAGAAGCTTTTGTTTTTGGAACAGATGGCGGTGTTGTGCTGATGCCTCGAATTCTAAATGCCTAGTTGTTTATAACTACTTATGTAATATCAACTTAAGCTTTTGGGGAATGGAGGATAGTGGCTTTGTCAATCAGTGGCACAAGAGCTCTATAGATGAGATTAGCACACTCCCATTAGCAGCAGCTTTTGGGCAGAATTTGCAGCATTCTTATGCTCATACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCAAAATGCCATATTTGGGTATGCGAAACATCTCAGTTCATACCAAACAGCTAATCATTCGCCAAACGCACACGTCGTTGCATATCCGACCATGTCTGTTTCGGCTTCGAACTACACGAATCAAATGGACTTCACAAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATCAGCAACATCCCTTCTGATATGTTGATTTCTCAGGGCTCATTATGTCACCAAAGCCATTTAACCAAGTCCGACCGTGGAGCGAAAAGAACTGCTATCAAAAGTAGACTCCCCCCGGCTCAAGATCACATTCTTGCAGAGCGGAAACGGCGAGAGAAGCTCAGCCAGCGGTTTATTGCCTTGTCTGCTATCGTTCCTGGTCTTAAGAAGATGGACAAGGCTTCTGTTCTTGGAGATGCCATCAAGTACCTGAAACAACTGCAGGAGAAAGTGAAGATACTAGAGGAACAAACTCGAAGGAAAGACATTGAATCCGTGGTATTCATCAAGAAATCCCGAGTTTTCGGTGATGGAAACAACACATCGAAAATGGAGGATGAGCCACTTCCCGAGATCGAAGCCAGATCTTGCGACAAGAACATCCTTATAAGAATACACTGTGTGAAAAACAAAGATGTCATAGAGAAGACCATTGCTGAAATTGAAAAGTCCGTGATGTGGGGGTTTTTTTCTGTCATTTTTGTGTCCTGTTTGGAGTTTATTACTGTTTGTTTGCTGTTTTTTGAGGCTTCCATGACATTGTTTCAGCCTCTTTTTACACTCACTTTGCTTTAG 1062 43.03 MYDHLGVLRSFCFWNRWRCCADASNSKCLVVYNYLCNINLSFWGMEDSGFVNQWHKSSIDEISTLPLAAAFGQNLQHSYAHTNLDQKASSNHSQNAIFGYAKHLSSYQTANHSPNAHVVAYPTMSVSASNYTNQMDFTRPKEEVVCPQSISNIPSDMLISQGSLCHQSHLTKSDRGAKRTAIKSRLPPAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFIKKSRVFGDGNNTSKMEDEPLPEIEARSCDKNILIRIHCVKNKDVIEKTIAEIEKSVMWGFFSVIFVSCLEFITVCLLFFEASMTLFQPLFTLTLL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10127297 10135082 - CmoCh11G014410.1 Cmo11g01441 392060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01441 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Cmo11g01441 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 250 IPR036638 GO:0046983
Cmo11g01441 353 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
Cmo11g01441 353 Gene3D - 187 257 IPR036638 GO:0046983
Cmo11g01441 353 PANTHER BHLH TRANSCRIPTION FACTOR 43 315 - -
Cmo11g01441 353 SMART finulus 193 242 IPR011598 GO:0046983
Cmo11g01441 353 CDD bHLH_AtNAI1_like 189 261 - -
Cmo11g01441 353 Coils Coil 226 253 - -
Cmo11g01441 353 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 43 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01441 - - - cmax:111486032 517.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01441 Cmo19g00526 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01441 Cmo-Chr11:10127297 Cmo06g00657 Cmo-Chr6:3318070 4.96E-18 dispersed
Cmo11g01441 Cmo-Chr11:10127297 Cmo19g00526 Cmo-Chr19:6152064 8.31E-142 wgd
Cmo11g01441 Cmo-Chr11:10127297 Cmo03g00907 Cmo-Chr3:6973129 2.85E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10628 PF00010 HLH 5.50E-10 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01441 Cmo_Chr11 FPKM 54.964329 62.591537 86.591103 95.887451 76.066727 76.341774 81.889717 95.478027 97.151283 99.699661