Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01443 ATGGCCGCCGCTAGAGTCTTAGCCAATGCCACCACCACCGCCGCCGTCACTGCCTCCTGTTTCCTATCTAAGACATCCCTTTTTCCCAAACACAGGCTCCCATATGATTCCAATTTCCTTTCCTTCTCCAGAAGACTCCCCTCCTCCAGAAAATCTTTCTCCTGCAGAGCTTTGTACATTCCTGAGGTTAAGATCAAGGAGGAAGGCCAGCCTGAAACCCTCGACTATCGCGTCTTCTTCACTGACCAGTCCGGCAAAAAGGTCTCCCCATGGCATGATATTCCATTGCATTTGGGGGATGGTGTTTTCAACTTCATTGTTGAAATTCCAAAAGAAACCAGCGCAAAAATGGAGGTCGCAACAGATGAGTCGTTCACTCCTATAAAGCAAGATATCAAAAAGGGGAAGCTTCGATACTACCCTTACAATATCAACTGGAATTATGGATTGCTTCCACAAACATGGGAAGATCCATCCTTTGCTAACTCTGAAGTTGAAGGTGCATTTGGAGATAATGATCCTGTTGATGTTGTTGAAATTGGTGAAAGTGATCGTAAGATAGGTGAGATTCTGAAAGTGAAACCAGTGGCTGCTTTAGCCATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCATTAGACGATCCTAAAGCTTCACTAGTGAATGATATAGACGATGTCGAGAAACATTTCCCGGGAACCTTAACTGCTATAAGGGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAACCCGCTAATAGGTTTGGTCTGGGGAACATGCCTGCCAACAAGGATTATGCCCTTAAAGTTATTGAAGAGACCAACAAATCATGGGCCAATCTCGTGAAGAGATCAATTCCTTCTGGTGAGCTGTCTCTTGTATAG 897 44.37 MAAARVLANATTTAAVTASCFLSKTSLFPKHRLPYDSNFLSFSRRLPSSRKSFSCRALYIPEVKIKEEGQPETLDYRVFFTDQSGKKVSPWHDIPLHLGDGVFNFIVEIPKETSAKMEVATDESFTPIKQDIKKGKLRYYPYNINWNYGLLPQTWEDPSFANSEVEGAFGDNDPVDVVEIGESDRKIGEILKVKPVAALAMIDEGELDWKIVAISLDDPKASLVNDIDDVEKHFPGTLTAIRDWFRDYKIPDGKPANRFGLGNMPANKDYALKVIEETNKSWANLVKRSIPSGELSLV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10138997 10143255 + CmoCh11G014430.1 Cmo11g01443 392062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01443 298 SUPERFAMILY Inorganic pyrophosphatase 64 294 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo11g01443 298 Gene3D Inorganic pyrophosphatase 62 298 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo11g01443 298 PANTHER SOLUBLE INORGANIC PYROPHOSPHATASE 6, CHLOROPLASTIC-LIKE 33 298 - -
Cmo11g01443 298 PANTHER INORGANIC PYROPHOSPHATASE 33 298 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo11g01443 298 Pfam Inorganic pyrophosphatase 105 282 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo11g01443 298 CDD pyrophosphatase 101 280 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo11g01443 298 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Cmo11g01443 298 ProSitePatterns Inorganic pyrophosphatase signature. 171 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01443 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - csv:101207157 533.872
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01443 Cmo19g00522 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01443 Cmo-Chr11:10138997 Cmo17g00534 Cmo-Chr17:5249898 3.14E-07 dispersed
Cmo11g01443 Cmo-Chr11:10138997 Cmo19g00522 Cmo-Chr19:6124525 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g830 . Blo03g00046 Bda06g01142 . Bpe07g00302 . Bma05g00627 Bma12g00318 Cmo19g00522 Cmo11g01443 . . . . Sed06g0813 Cpe04g00346 Cpe15g00404 Bhi05g00978 Tan02g1096 Cmetu01g2563 Lac12g0119 Hepe02g0683 . . . . . . . . . . . Cone3ag1063 Cone10ag1078 Lsi03g00651 . . . . . . . . Bpe05g00451 . . . . . Cma11g01683 Cma19g00509 Car11g01159 Car19g00382 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004500 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01443 Cmo_Chr11 FPKM 101.522102 118.291672 124.943459 125.633881 95.142967 99.652534 93.334732 177.359299 171.663651 174.333313