Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01447 ATGGGGTCAAATGGTTCTCACTGTATTCAAATTGGGTGTATTGGATTCATGAGCTTGGACACTATGTTGGAACCGGTTAGTTGCTGCCAGACCTCGCAGTCCCAGATTTACAGTGTAGTTAAACAGAAGAATCCTTTAAGAGCCTACTCTCATACTGTTCATCAACATTGTGGATCTTCCTTCAACTTGCATTATTCACGCTCGAAGAAAGTGACCGTTCCATCAAGCATCGTAAATTGCTGGAGGAATGACTATTCCTTTGTCCCTATACAATCCCACAACAATGCTACTACGTTAAACATCAAATTAGTTGGACGAAATGGATACAATTGGTATAATCATAGGCATAAACCAAGGCAAAGATCAAGAATGCATGCAGCTATTGATGTTGCAGCTGCTGTGGATGTCATCAACGATTTAGGATTGGACACACTGACATTCCTAGCTGTGACTGTCATAGTTGTTCCTCTATTTAGGAGAATTAAAGCTAGCCCTATTCTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGTGTGATTAGAAATCTTACAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGGTTGGAGCTTTCATTTGCACGTCTAAAAGCTCTTGCAAGGTTTGCATTTGGCATGGGTTTGACACAGGTCATGTTATCGACTATCGCTTTCACAGCGTTTGAACTTCCCCCTAATGGAGCTATTGGAACAAGGATTTTGGAGTTCCTTTTTCACGCCAGATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCGATTGTGATCGGTGCTGCCCTCTCTCTATCTTCTTCAGCGTTCGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCAACAAGATTTGGGTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCATACTTCCTGTTCTTGAGAGCCAGAATTTGGGAACGGAAAGTATCTGGCCAATGCTTGCACAAGAAAGTCTGAAGGCTTTAGGTGGACTCGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTCGAGGTCGTTGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCTCTTTGCCTGCTGACAGTTGCTGGCACATCACTAATCACTCAGAAACTGGGCTTTAGTGACACGCTGGGAGCATTTTTGGCTGGAGCAATATTAGCAGAAACTAATTTCCGGACACAGATTGAAGCTGATATTAGGCCATTTAGGGGCTTGCTCCTCGGGTTATTCTTTGTTACGACCGGGACCTCCATTGATACGCAGCTCCTGTTTCGAGAATGGCCGAATGTCCTTGCCCTTTTGGCAGGTTTAATAGCCATCAAGACGCTTATAATAACAGCAATAGGTCCCCGTGTCGGTCTCACAACTCAAGAAAGTGTACGAATAGGATTTCTTCTATCGCAAGGAGGCGAGTTCGGGTTTGTAGTGTTTTCTCTGGCAAACAGGCTTGGAGTGTTACCACTTGAGTTAAACAAGCTACTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCGTTGCTAAACGAAGCTGGACGGAAGGCGTCTGAATACATCAGTGAAAAGTACAAGACAGACGATAAAGCTGCAGACACGGTGAATTTCGACGCTACCGAACCTGTTATCATCGTTGGATTCGGTCAAATGGGTCAGGTCCTGGCAAATTTCTTATCTACACCTTTGGTATCTGGAGCTGATGGCAGCTCTCCTGGATGGCCATATGTAGCGTTTGATATCGATCTTTCCGTAGTGAAGAGGTCAAGAAAACTTGGTTTTCCCGTTCTCTACGGAGACGGATCACGACCAGCAGTTCTGCAATCTGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGATCACGGAGAAGAAGGCAACAATCGAGGCCGTTCAAAAGCTCCGTCTCGCCTTCCCTGCGATCCCGATTTACGCCCGAGCTAAAGACGTGATGCATCTATTAGATTTAAAGAATGCCGGTGCAACGGATGCTATTCTCGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGGCTCGGCGTCATGTCCGACCAAGTGTCGTTCCTTAGTCAGATGGTTCGAAACTCTATGGAAGTACGAGCACAAGATGCACTCGACAAATCCAACGAGCAAGAGTTAGAGATTATGAAACCACTGCAGATACGTGTGAAGGACTCGATCATGACCCCGGAGAGCGAACTGTCGAGGCTGAACGGCAAAGAAATGGATGAAAGGAAGCAAGAAGATTTAGATGGAAAAGGAGTCCTGTACTGTGAACTTGATACAGAGGAAAACAGTTCAGATCCTGATAATATGGTACAGCCTCCAACCCCTTACATCACAGCCACTGATGCCTTGGAAAACTGA 2442 44.88 MGSNGSHCIQIGCIGFMSLDTMLEPVSCCQTSQSQIYSVVKQKNPLRAYSHTVHQHCGSSFNLHYSRSKKVTVPSSIVNCWRNDYSFVPIQSHNNATTLNIKLVGRNGYNWYNHRHKPRQRSRMHAAIDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNLTDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVMLSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDTQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEYISEKYKTDDKAADTVNFDATEPVIIVGFGQMGQVLANFLSTPLVSGADGSSPGWPYVAFDIDLSVVKRSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMITEKKATIEAVQKLRLAFPAIPIYARAKDVMHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEVRAQDALDKSNEQELEIMKPLQIRVKDSIMTPESELSRLNGKEMDERKQEDLDGKGVLYCELDTEENSSDPDNMVQPPTPYITATDALEN 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10182273 10191676 - CmoCh11G014470.1 Cmo11g01447 392066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01447 813 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 562 700 IPR036291 -
Cmo11g01447 813 MobiDBLite consensus disorder prediction 757 813 - -
Cmo11g01447 813 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 76 761 - -
Cmo11g01447 813 ProSiteProfiles RCK N-terminal domain profile. 562 694 IPR003148 GO:0006813
Cmo11g01447 813 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 76 761 - -
Cmo11g01447 813 Gene3D - 139 539 IPR038770 -
Cmo11g01447 813 Pfam Sodium/hydrogen exchanger family 147 531 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo11g01447 813 Pfam TrkA-N domain 563 686 IPR003148 GO:0006813
Cmo11g01447 813 Gene3D - 560 729 - -
Cmo11g01447 813 MobiDBLite consensus disorder prediction 761 783 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01447 Cmo-Chr11:10182273 Cmo14g02083 Cmo-Chr14:15133237 1.38E-80 dispersed
Cmo11g01447 Cmo-Chr11:10182273 Cmo19g00518 Cmo-Chr19:6093556 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01447 - - csv:101209266 1307.74