Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01452 ATGTTGCAGTTTTCGATTCGGCGAGTGAGGAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTCTTAGCAATTCTCGATTCTCCACCTCTCCTGAACCGTCTTCCAAGCCTAATCCTCCGAGAGTTCCTAATCTTATAGGAGGGAATTTTGTTGATTCCCGATCCTCAGCGTTTATAGATGTCATAAATCCAGCGACCCAAGAAGTTGTTTCTCAAGTTCCATTAACCACAAATGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACCCCAGTCACAACTCGCCAAAGAGTTATGCTCAAGCTTCAAGAACTTATCAGGCGAGATATTGACAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCGCATGGAGATGTATTCCGGGGGCTAGAGGTCGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTTTCACATGGAATTGATACGTACAGCATCAGAGAGCCTCTAGGCGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATTCCCCTATGGATGTTTCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGACGAAGATATAAAAGCAATATCATTTGTTGGTTCGAACATTGCGGGCATGCATATATTTTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCTGATGCCAACATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAATTGTGGGAGGATAAACTTGTAGAACGTGCCAAAGCTCTGAAGGTAAGTTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAGATATAGTGGTTCCTGGATATGAGCAAGGAAATTTTATTGGCCCTACTGTCTTAACAGACGTGACGCCTGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTTGAGGAGGCCATTAGCATCGTTAACAGAAATAGGTATGGCAATGGAGCTTCTATATTCACCGAATCTGGCATAGCAGCGAGGAAGTTTCAAACTCAAATTGAAGCTGGACAGGTCGGAATCAACGTTCCAATCCCCGTTCCCTTACCCTTCTTCTCGTTCACTGGCTCGAAGGCATCTTTCGCCGGGGATCTCAACTTTTATGGGAAGGCAGGGGTTAACTTCTTCACTCAGATCAAAACAGTTACACAACAATGGAAAGAATCAGGTGGGGGAAGTGCCGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 44.18 MLQFSIRRVRKLNVLRPQIFALSNSRFSTSPEPSSKPNPPRVPNLIGGNFVDSRSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRVMLKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIFSRGSAKGKRVQSNMGAKNHAIVLPDANIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKALKVSSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRDIVVPGYEQGNFIGPTVLTDVTPDMECYKEEIFGPVLLCMQAESFEEAISIVNRNRYGNGASIFTESGIAARKFQTQIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKESGGGSAVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10209597 10217062 + CmoCh11G014520.1 Cmo11g01452 392071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01452 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 13 534 - -
Cmo11g01452 537 SUPERFAMILY ALDH-like 38 519 IPR016161 GO:0016491
Cmo11g01452 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 13 534 IPR010061 GO:0004491
Cmo11g01452 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Cmo11g01452 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491
Cmo11g01452 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Cmo11g01452 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Cmo11g01452 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Cmo11g01452 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 518 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01452 Cmo-Chr11:10209597 Cmo20g00311 Cmo-Chr20:1515459 3.73E-67 dispersed
Cmo03g00888 Cmo-Chr3:6890483 Cmo11g01452 Cmo-Chr11:10209597 0 transposed
Cmo11g01452 Cmo-Chr11:10209597 Cmo19g00507 Cmo-Chr19:6005476 5.53E-28 wgd
Cmo11g01452 Cmo-Chr11:10209597 Cmo03g00887 Cmo-Chr3:6888489 1.73E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01452 K00140 - csv:101204924 984.556