Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01455 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGTCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGGGGGATGAGTGGCTCGGTCTCAGCGATGAACCGAGTACAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTCACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAGAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCATCTAAAGCTAGTGCAGATGAAGTGGGCTCATCTTCAGTCTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGGCCAGCAGGCCCGAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCATTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGTGACGGTGAAGCTAACGAGTCCGATGCTGCTATAAACGTGGATGCCCTCGCTTCTAATGGTGGTAAATAG 921 49.29 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGIQEPSVKETEQSDGEANESDAAINVDALASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10243116 10247757 - CmoCh11G014550.1 Cmo11g01455 392074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01455 306 SMART tify_2 86 121 IPR010399 -
Cmo11g01455 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 Pfam tify domain 90 120 IPR010399 -
Cmo11g01455 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Cmo11g01455 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cmo11g01455 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 270 - -
Cmo11g01455 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 MobiDBLite consensus disorder prediction 30 58 - -
Cmo11g01455 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 Gene3D - 221 280 IPR013088 GO:0006355|GO:0008270
Cmo11g01455 306 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Cmo11g01455 306 MobiDBLite consensus disorder prediction 34 48 - -
Cmo11g01455 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cmo11g01455 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cmo11g01455 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00561 Cmo-Chr5:2750666 Cmo11g01455 Cmo-Chr11:10243116 5.24E-68 dispersed
Cmo08g00819 Cmo-Chr8:5200905 Cmo11g01455 Cmo-Chr11:10243116 9.95E-69 dispersed
Cmo11g01455 Cmo-Chr11:10243116 Cmo17g00616 Cmo-Chr17:6496734 1.09E-62 dispersed
Cmo11g01455 Cmo-Chr11:10243116 Cmo19g00501 Cmo-Chr19:5952207 9.10E-179 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10629 PF06203 CCT 1.60E-15 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01455 - - csv:101222542 523.857