Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01455 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGTCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGGGGGATGAGTGGCTCGGTCTCAGCGATGAACCGAGTACAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTCACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAGAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCATCTAAAGCTAGTGCAGATGAAGTGGGCTCATCTTCAGTCTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGGCCAGCAGGCCCGAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCATTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGTGACGGTGAAGCTAACGAGTCCGATGCTGCTATAAACGTGGATGCCCTCGCTTCTAATGGTGGTAAATAG 921 49.29 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGIQEPSVKETEQSDGEANESDAAINVDALASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10243116 10247757 - CmoCh11G014550.1 Cmo11g01455 392074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01455 306 SMART tify_2 86 121 IPR010399 -
Cmo11g01455 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 Pfam tify domain 90 120 IPR010399 -
Cmo11g01455 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Cmo11g01455 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cmo11g01455 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 270 - -
Cmo11g01455 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 MobiDBLite consensus disorder prediction 30 58 - -
Cmo11g01455 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 Gene3D - 221 280 IPR013088 GO:0006355|GO:0008270
Cmo11g01455 306 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cmo11g01455 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Cmo11g01455 306 MobiDBLite consensus disorder prediction 34 48 - -
Cmo11g01455 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cmo11g01455 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cmo11g01455 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01455 - - - csv:101222542 523.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00561 Cmo-Chr5:2750666 Cmo11g01455 Cmo-Chr11:10243116 5.24E-68 dispersed
Cmo08g00819 Cmo-Chr8:5200905 Cmo11g01455 Cmo-Chr11:10243116 9.95E-69 dispersed
Cmo11g01455 Cmo-Chr11:10243116 Cmo17g00616 Cmo-Chr17:6496734 1.09E-62 dispersed
Cmo11g01455 Cmo-Chr11:10243116 Cmo19g00501 Cmo-Chr19:5952207 9.10E-179 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo17g00201 CST 1 180 Tify Gene Family AT4G14713 52.1 4.7e-45 178.7
Cmo08g01098 CST 1 180 Tify Gene Family AT4G14713 52.1 1.4e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10629 PF06203 CCT 1.60E-15 CL0281 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01455 Cmo_Chr11 FPKM 8.714912 9.865476 11.023891 10.384471 9.630169 10.595547 9.378612 12.780862 14.49488 12.675052