Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01477 ATGGATTTCCTCTCCCGAAAGCTCCTCTCCGACGACGACGACGACGACCTCAAGAAACTCTGCCTTAAAACCTGCCCCAATAACTCTCCCGATTCTTGCCCTTCCGATTGCCTCGAAAAATGCCCAAACCTTTGTTCCCGTGGCTCGATTTCAATCCCGCCGCCCTATTACGACAAATCGCCTCACAAACTCTCCAATTGGGTCACAGCCACCATCGCCTTTCTCTCTTTCACCTTTCTCCTCGTCATCTGTTACACCGTCTACGTCCGTTTCTACTCCGGCCGCCGCAGACGCCACCAACGCCCTGACCCCCCACCGCCCACCACCCACCAAGAGGAGTTTCTCGATGAAGAACATGGCCCTGTTTTGGATCACCCCATCTGGTATATCCGTACCATCGGCCTCCCGCCGGCTGTCATCAACGCCATCGCTATCTGCAAATTCAAAACCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTTGAAGAGGATGAGACTCTTAGACTTTTGCCTAAGTGTAGCCACGCTTTTCATCTCCCCTGTATCGACACTTGGCTTCAATCCCACACGAACTGCCCCATGTGCCGCGCTCCAGTGGTAGCTCAATCCACCGCCGTGACCCCACCGCCGCCGCCGCCTCCGCCTCCTCTGGTCACATCTGAAGAAACCCAGATGAGGGATTTACAGAGGGAAGTGGGAAATGGATCCAATTCCGGCGAATCTTCTCTAAGAAACGAAGAACAACAAGAACAACAAGAACAAGATGAAATTCAGGCAGTGAGAAGATCAGTTTCTTTAGATTCATTATCAGCTCTTCGAATAATCTCTGATCTTGCTGACATTGGTATGAGAAATGGGAATGATTTGAAGAAGAAATCATCCCAAGAGAGAGTGAATTCTTCAGCAGCTATGAACAGGTCAGTTTCTTGCAGTGGCGAATTTGTGATGAGAAATTCGACACAGAGTAGTAGTTGA 993 50.25 MDFLSRKLLSDDDDDDLKKLCLKTCPNNSPDSCPSDCLEKCPNLCSRGSISIPPPYYDKSPHKLSNWVTATIAFLSFTFLLVICYTVYVRFYSGRRRRHQRPDPPPPTTHQEEFLDEEHGPVLDHPIWYIRTIGLPPAVINAIAICKFKTGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLQSHTNCPMCRAPVVAQSTAVTPPPPPPPPPLVTSEETQMRDLQREVGNGSNSGESSLRNEEQQEQQEQDEIQAVRRSVSLDSLSALRIISDLADIGMRNGNDLKKKSSQERVNSSAAMNRSVSCSGEFVMRNSTQSSS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10443138 10444130 - CmoCh11G014770.1 Cmo11g01477 392096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01477 330 SUPERFAMILY RING/U-box 154 208 - -
Cmo11g01477 330 MobiDBLite consensus disorder prediction 237 263 - -
Cmo11g01477 330 Pfam Ring finger domain 159 202 IPR001841 -
Cmo11g01477 330 SMART ring_2 160 201 IPR001841 -
Cmo11g01477 330 PANTHER RING-H2 FINGER PROTEIN ATL54 22 321 - -
Cmo11g01477 330 CDD RING-H2_EL5_like 159 202 - -
Cmo11g01477 330 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 321 IPR044675 -
Cmo11g01477 330 Coils Coil 249 269 - -
Cmo11g01477 330 MobiDBLite consensus disorder prediction 210 225 - -
Cmo11g01477 330 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Cmo11g01477 330 MobiDBLite consensus disorder prediction 209 228 - -
Cmo11g01477 330 MobiDBLite consensus disorder prediction 289 313 - -
Cmo11g01477 330 MobiDBLite consensus disorder prediction 237 251 - -
Cmo11g01477 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01477 - - - cmo:103495376 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01477 Cmo-Chr11:10443138 Cmo14g01978 Cmo-Chr14:14563522 3.44E-34 dispersed
Cmo17g00017 Cmo-Chr17:77295 Cmo11g01477 Cmo-Chr11:10443138 2.24E-22 dispersed
Cmo11g01477 Cmo-Chr11:10443138 Cmo19g00246 Cmo-Chr19:1728060 2.02E-48 wgd
Cmo11g01477 Cmo-Chr11:10443138 Cmo03g00868 Cmo-Chr3:6774014 1.12E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01477 Cmo_Chr11 FPKM 2.401993 1.71893 0.0 0.0 7.278839 8.906456 8.806345 1.15308 1.150201 1.327594