Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01481 ATGGATACCAAAAGTGAATGTTGGTGTTGCAAGATCAAGAACAACCACACAAAACTCACTCCCTTCAAATGCAAATGCATCAAGTTCAAACCTTCTTCTTCTTCCTCCTCCGATGTCGGGGCACTGCACACGAGTCGGGATGATGAATTGGGGGCGGAAATGGAACTCCGGCCACCACCGTCCCCAATGAAAAGCCTCTCCTCCTCTGCGTCGGACACGGGTCTGAGAAAGCGAGCTCTCCTATGTGGGGTGAGTTACAAGAATTGGAAGCATAGGCTACATGGCACAGTGAATGATGTGTTGAATATGCAAGATTTGTTGATCAACCATTTCTCATATCTCAAACAAAACATTCGTATTCTTACAGAAGACGAAGCAAATCCAGAGCGAATTCCGACGAAGAAGAACATTCAGAGCAGTCTAAAATGGCTAGTGGAGGATTGCTACGGAGGCGAAAGCCTGGTGTTCTATTTCTCCGGTCACGGATTGCGGCAGCCGGATTTCGCAATGGACGAACTCGACGGCTACGACGAGACCATATGCCCCGTCGATTTCTTGGAGGAAGGAATGATTAGCGACAACGAAATCAACGCCACCATTGTTTCGCCTCTCAGAAGCGGCGTCAATCTCCACGCCATTGTGGACGCTTGCCACAGCGGAACCATTCTGGATCTCGCCTATGTTTACGATCGCACCAGGAGTGTGAGGTTTTCGGATGGTGGAAGGGATGAGTGGATCGATAATCGGCCGCCGTCGGGGGCGAGTAAGGCGACTAGCGGCGGATTGGCGATTTCTTTGAGTGCCTGTGGAGATGATCAGTTCGCTGCTGATACTTCCATATTGACAGGAAAGTCGATGAACGGAGCAATGACATTCATTTTGATCGACTTGATAAAGACTTATGGGAACGTTACATATGGACATCTCTTGGATTGCATGCACAATGCTGTTGAGAAGGCCAACAAACGAGGTTGTATCGCCTTCCCGTTCTTCCGAAGATTGTTTGGGTATAAGCAAATTCAGGAACCTCTACTGTCTTCGTCAGAGATGTTTGATGTGCACAAGAAAATATTTACATTGTAA 1083 47.92 MDTKSECWCCKIKNNHTKLTPFKCKCIKFKPSSSSSSDVGALHTSRDDELGAEMELRPPPSPMKSLSSSASDTGLRKRALLCGVSYKNWKHRLHGTVNDVLNMQDLLINHFSYLKQNIRILTEDEANPERIPTKKNIQSSLKWLVEDCYGGESLVFYFSGHGLRQPDFAMDELDGYDETICPVDFLEEGMISDNEINATIVSPLRSGVNLHAIVDACHSGTILDLAYVYDRTRSVRFSDGGRDEWIDNRPPSGASKATSGGLAISLSACGDDQFAADTSILTGKSMNGAMTFILIDLIKTYGNVTYGHLLDCMHNAVEKANKRGCIAFPFFRRLFGYKQIQEPLLSSSEMFDVHKKIFTL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10472368 10475662 + CmoCh11G014810.1 Cmo11g01481 392100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01481 360 PANTHER METACASPASE-4 43 360 - -
Cmo11g01481 360 Pfam Caspase domain 76 352 - -
Cmo11g01481 360 Gene3D - 27 360 - -
Cmo11g01481 360 SUPERFAMILY Caspase-like 81 226 IPR029030 -
Cmo11g01481 360 MobiDBLite consensus disorder prediction 52 71 - -
Cmo11g01481 360 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 43 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01481 K22684 MCA1; metacaspase-1 [EC:3.4.22.-] - csv:101220178 497.278
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01481 Cmo16g00251 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01223 Cmo-Chr6:9283718 Cmo11g01481 Cmo-Chr11:10472368 5.06E-87 dispersed
Cmo11g01481 Cmo-Chr11:10472368 Cmo14g01982 Cmo-Chr14:14585984 2.60E-83 dispersed
Cmo11g01481 Cmo-Chr11:10472368 Cmo19g00271 Cmo-Chr19:1976344 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1005 . . . . . . . . . Cmo11g01481 . . . . . Cpe04g00376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00251 . . Car11g01184 . Cpe14g00192 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007266 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 2 5 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01481 Cmo_Chr11 FPKM 17.807306 20.310202 50.529316 47.949535 15.043797 15.378468 14.676353 93.563782 91.425865 88.127663