Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01484 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCCGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACCGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCAAGCTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCATCATATGAAGATGCTGATACTGACACTTACCAAGAAACTTCAAGATTTCACTCATTTCCAACATCACCACTAATGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTCCATCAAATATTTACTATCCACATTCCTCTTCCAATAATATTGAAGCTTGGCCATCGGCTCCTGCCGTGGAATATGTACCCCAAGTTCAGAAAGATGGACTTGGGAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATCTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGAGAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAATGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGAACTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAACGCAACTTTTGGAAGCGGTCATGCTCATCCTAGCATAGAGAATAAGGAGCTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACTAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCACGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGCGAGGTGCGTGAATTTGATTACCTGGCAGACTCTGCTCAAGATGTAGATGTTACCAATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGCTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTAATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTCAGAGACGTTAATGGATGGACTGCTGTTCATTGGGCAGCATTCTATGGCAGGGAGTTGACAGTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCAATCCTTCGGGCACAACGCCTGCAGACCTTGCTTCTGTAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGACGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGAAAGGCAACACCAATAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGAAAGCAATTATCAGAGCGTGGAGCTGATGAATTTGGATACTCAGATGATAGTGCTATTTCGGTTGTCGCTGCCAGGGCACGCAAGTCTCGACTGAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTTATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATACAAAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGACGACGAAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAGTATCCTGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTATTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3273 42.56 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADTDTYQETSRFHSFPTSPLMNNGLLVNKKEAGPSNIYYPHSSSNNIEAWPSAPAVEYVPQVQKDGLGSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQENSIPGKLLAGNNAIKEDFKSSLTMASNCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKELFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAQDVDVTNVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTAVHWAAFYGRELTVGTLITLGADPGLPSDPSPGNPSGTTPADLASVRGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQLSERGADEFGYSDDSAISVVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDEDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISITSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10488400 10503901 - CmoCh11G014840.1 Cmo11g01484 392103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01484 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 963 IPR027417 -
Cmo11g01484 1090 MobiDBLite consensus disorder prediction 763 783 - -
Cmo11g01484 1090 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cmo11g01484 1090 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Cmo11g01484 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1090 - -
Cmo11g01484 1090 MobiDBLite consensus disorder prediction 147 207 - -
Cmo11g01484 1090 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cmo11g01484 1090 Pfam IQ calmodulin-binding motif 938 957 IPR000048 GO:0005515
Cmo11g01484 1090 Pfam IQ calmodulin-binding motif 914 933 IPR000048 GO:0005515
Cmo11g01484 1090 SMART iq_5 935 957 IPR000048 GO:0005515
Cmo11g01484 1090 SMART iq_5 912 934 IPR000048 GO:0005515
Cmo11g01484 1090 Pfam IPT/TIG domain 503 581 IPR002909 -
Cmo11g01484 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1090 - -
Cmo11g01484 1090 ProSiteProfiles Ankyrin repeat region circular profile. 737 763 - -
Cmo11g01484 1090 ProSiteProfiles IQ motif profile. 936 960 IPR000048 GO:0005515
Cmo11g01484 1090 SUPERFAMILY E set domains 504 588 IPR014756 -
Cmo11g01484 1090 SUPERFAMILY Ankyrin repeat 685 798 IPR036770 -
Cmo11g01484 1090 CDD IPT 503 589 - -
Cmo11g01484 1090 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cmo11g01484 1090 Gene3D - 913 960 - -
Cmo11g01484 1090 Gene3D Immunoglobulins 497 593 IPR013783 -
Cmo11g01484 1090 Gene3D - 663 835 IPR036770 -
Cmo11g01484 1090 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00180 Cmo-Chr8:1057956 Cmo11g01484 Cmo-Chr11:10488400 4.18E-39 dispersed
Cmo11g01484 Cmo-Chr11:10488400 Cmo14g01600 Cmo-Chr14:12669516 1.63E-61 dispersed
Cmo11g01484 Cmo-Chr11:10488400 Cmo19g00274 Cmo-Chr19:2003464 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10630 PF03859 CG-1 4.80E-50 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01484 K21596 - csv:101203707 1699.87