Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01484 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCCGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACCGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCAAGCTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCATCATATGAAGATGCTGATACTGACACTTACCAAGAAACTTCAAGATTTCACTCATTTCCAACATCACCACTAATGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTCCATCAAATATTTACTATCCACATTCCTCTTCCAATAATATTGAAGCTTGGCCATCGGCTCCTGCCGTGGAATATGTACCCCAAGTTCAGAAAGATGGACTTGGGAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATCTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGAGAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAATGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGAACTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAACGCAACTTTTGGAAGCGGTCATGCTCATCCTAGCATAGAGAATAAGGAGCTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACTAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCACGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGCGAGGTGCGTGAATTTGATTACCTGGCAGACTCTGCTCAAGATGTAGATGTTACCAATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGCTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTAATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTCAGAGACGTTAATGGATGGACTGCTGTTCATTGGGCAGCATTCTATGGCAGGGAGTTGACAGTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCAATCCTTCGGGCACAACGCCTGCAGACCTTGCTTCTGTAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGACGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGAAAGGCAACACCAATAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGAAAGCAATTATCAGAGCGTGGAGCTGATGAATTTGGATACTCAGATGATAGTGCTATTTCGGTTGTCGCTGCCAGGGCACGCAAGTCTCGACTGAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTTATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATACAAAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGACGACGAAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAGTATCCTGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTATTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3273 42.56 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADTDTYQETSRFHSFPTSPLMNNGLLVNKKEAGPSNIYYPHSSSNNIEAWPSAPAVEYVPQVQKDGLGSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQENSIPGKLLAGNNAIKEDFKSSLTMASNCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKELFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAQDVDVTNVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTAVHWAAFYGRELTVGTLITLGADPGLPSDPSPGNPSGTTPADLASVRGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQLSERGADEFGYSDDSAISVVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDEDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISITSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10488400 10503901 - CmoCh11G014840.1 Cmo11g01484 392103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01484 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 963 IPR027417 -
Cmo11g01484 1090 MobiDBLite consensus disorder prediction 763 783 - -
Cmo11g01484 1090 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cmo11g01484 1090 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Cmo11g01484 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1090 - -
Cmo11g01484 1090 MobiDBLite consensus disorder prediction 147 207 - -
Cmo11g01484 1090 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cmo11g01484 1090 Pfam IQ calmodulin-binding motif 938 957 IPR000048 GO:0005515
Cmo11g01484 1090 Pfam IQ calmodulin-binding motif 914 933 IPR000048 GO:0005515
Cmo11g01484 1090 SMART iq_5 935 957 IPR000048 GO:0005515
Cmo11g01484 1090 SMART iq_5 912 934 IPR000048 GO:0005515
Cmo11g01484 1090 Pfam IPT/TIG domain 503 581 IPR002909 -
Cmo11g01484 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1090 - -
Cmo11g01484 1090 ProSiteProfiles Ankyrin repeat region circular profile. 737 763 - -
Cmo11g01484 1090 ProSiteProfiles IQ motif profile. 936 960 IPR000048 GO:0005515
Cmo11g01484 1090 SUPERFAMILY E set domains 504 588 IPR014756 -
Cmo11g01484 1090 SUPERFAMILY Ankyrin repeat 685 798 IPR036770 -
Cmo11g01484 1090 CDD IPT 503 589 - -
Cmo11g01484 1090 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cmo11g01484 1090 Gene3D - 913 960 - -
Cmo11g01484 1090 Gene3D Immunoglobulins 497 593 IPR013783 -
Cmo11g01484 1090 Gene3D - 663 835 IPR036770 -
Cmo11g01484 1090 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01484 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1699.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00180 Cmo-Chr8:1057956 Cmo11g01484 Cmo-Chr11:10488400 4.18E-39 dispersed
Cmo11g01484 Cmo-Chr11:10488400 Cmo14g01600 Cmo-Chr14:12669516 1.63E-61 dispersed
Cmo11g01484 Cmo-Chr11:10488400 Cmo19g00274 Cmo-Chr19:2003464 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10630 PF03859 CG-1 4.80E-50 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01484 Cmo_Chr11 FPKM 0.0 0.0 0.674834 0.351666 0.19103 0.0 0.302608 0.0 0.0 0.0