Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01508 ATGGCTGATGGTGAAGATATCCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTCGGTCGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCGAAAAGGGGTATTCTTACTTTGAAATACCCAATTGAGCATGGCATTGTGAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAACATCCGGTCCTTCTTACTGAAGCACCGCTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACGTTCGACGTCCCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGAGATGGAGTGAGCCACACAGTGCCAATATATGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATCTAACTGATGCTTTAATGAAAATTCTCACCGAAAGAGGTTACATGTTCACGACAACCGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAAGACTAGTTCGGCCATTGAGAAAAGCTACGAACTACCAGACGGGCAGGTAATTACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTACTTTTCCAGCCATCTCTGATCGGCATGGAATCTCCTGGAATCCATGAAACCACGTATAACTCCATCATGAAGTGTGATGTCGATATCAGGAAAGACTTATACGGTAACATCGTCCTCAGTGGTGGGTCAACGATGTTCCCCGGCATTGCTGATCGTATGAGCAAAGAAATTACCGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCCGAATACGACGAGTCGGGTCCTGCTATCGTTCACAGGAAATGCTTCTGA 1134 47.8 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETAKTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10693121 10696434 - CmoCh11G015080.1 Cmo11g01508 392127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01508 377 Gene3D - 140 340 - -
Cmo11g01508 377 PANTHER ACTIN-2-LIKE 1 376 - -
Cmo11g01508 377 PANTHER ACTIN 1 376 IPR004000 -
Cmo11g01508 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmo11g01508 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmo11g01508 377 Pfam Actin 5 377 IPR004000 -
Cmo11g01508 377 Gene3D - 10 371 - -
Cmo11g01508 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo11g01508 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo11g01508 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmo11g01508 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo11g01508 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmo11g01508 377 PRINTS Actin signature 28 37 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 51 62 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 63 85 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 117 130 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 142 161 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 238 254 IPR004000 -
Cmo11g01508 377 SMART actin_3 7 377 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01508 K10355 ACTF; actin, other eukaryote - csv:101214459 753.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01508 Cmo-Chr11:10693121 Cmo02g00807 Cmo-Chr2:4963969 0 dispersed
Cmo18g00718 Cmo-Chr18:8985471 Cmo11g01508 Cmo-Chr11:10693121 8.74E-63 dispersed
Cmo11g01508 Cmo-Chr11:10693121 Cmo19g00310 Cmo-Chr19:2317534 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT2G37620 96.3 8.0e-215 743.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 8.9e-214 740.0
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.5e-213 739.2
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.4e-213 738.0
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.4e-213 738.0
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.0 4.4e-213 737.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.9e-212 734.9
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.9e-212 734.9
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.9e-212 734.9
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.9e-212 734.2
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.9e-212 734.2
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.9e-212 734.2
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT2G37620 90.9 1.0e-209 726.5
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT2G37620 95.3 8.6e-201 696.8
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-200 695.3
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT2G37620 95.5 4.7e-199 691.0
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 8.9e-214 740.0
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 739.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.4e-213 737.6
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.7e-212 735.7
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 2.2e-212 735.3
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT5G59370 95.8 3.7e-212 734.6
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 8.3e-212 733.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 4.1e-211 731.1
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.2e-210 729.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-210 729.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.6e-210 727.6
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.6e-210 727.6
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT5G59370 89.9 1.4e-206 716.1
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT5G59370 96.9 7.8e-202 700.3
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-197 686.4
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT5G59370 95.2 1.2e-197 686.4
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 4.0e-214 741.1
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.8e-214 740.3
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.0e-213 738.8
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.5e-213 736.9
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 9.8e-213 736.5
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G46520 96.0 1.7e-212 735.7
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.7e-212 734.6
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 1.9e-211 732.3
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.4e-211 730.7
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 5.4e-211 730.7
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G46520 90.2 6.2e-207 717.2
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G46520 97.2 3.5e-202 701.4
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT3G46520 94.4 5.2e-198 687.6
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G46520 95.0 3.4e-197 684.9
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G12110 96.8 4.7e-215 744.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.1e-214 741.5
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 4.0e-214 741.1
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 6.8e-214 740.3
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 8.9e-214 740.0
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.2e-213 739.6
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.8
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.4e-213 737.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.7e-212 734.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 8.3e-212 733.4
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G12110 90.9 3.9e-209 724.5
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G12110 96.1 3.9e-201 698.0
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT3G12110 95.3 3.3e-200 694.9
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G12110 95.2 6.2e-199 690.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.6e-209 723.8
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.6e-209 723.8
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G18780 91.8 5.6e-208 720.7
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 7.3e-208 720.3
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 7.3e-208 720.3
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.6e-207 719.2
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.6e-207 719.2
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.1e-207 718.8
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.1e-206 716.5
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 3.1e-206 714.9
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G18780 88.6 2.0e-205 712.2
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G18780 92.7 3.4e-197 684.9
Cmo03g01068 . 34 398 Cytoskeleton Gene Families AT3G18780 91.8 1.3e-196 682.9
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G18780 91.3 1.7e-193 672.5
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.6e-208 720.7
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.6e-208 720.7
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 91.8 7.3e-208 720.3
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT1G49240 91.5 1.2e-207 719.5
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 2.3e-206 715.3
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT1G49240 88.9 6.8e-206 713.8
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.8e-206 713.8
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT1G49240 92.7 3.4e-197 684.9
Cmo03g01068 . 34 398 Cytoskeleton Gene Families AT1G49240 92.1 4.4e-197 684.5
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT1G49240 91.0 3.9e-193 671.4
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.1e-215 743.8
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.0e-214 741.1
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT5G09810 93.7 3.4e-213 738.0
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT5G09810 95.2 1.3e-212 736.1
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.9e-212 734.9
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.3e-212 733.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 1.1e-211 733.0
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.4e-211 732.6
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.0 4.1e-211 731.1
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT5G09810 97.8 1.1e-203 706.4
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT5G09810 95.5 7.3e-200 693.7
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 3.1e-198 688.3
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT2G19760 75.6 2.7e-56 215.3
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.5e-56 214.9
Cmo12g01309 CST 1 133 Cytoskeleton Gene Families AT2G19760 76.7 3.5e-56 214.9
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 73.3 2.2e-55 212.2
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT2G19760 72.5 2.9e-55 211.8
Cmo14g01321 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 1.6e-53 206.1
Cmo01g00092 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 4.7e-53 204.5
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT4G29350 75.6 7.7e-56 213.8
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 1.7e-55 212.6
Cmo12g01309 CST 188 318 Cytoskeleton Gene Families AT4G29350 75.6 2.9e-55 211.8
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT4G29350 72.5 8.5e-55 210.3
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.5e-54 209.5
Cmo14g01321 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.0 3.0e-52 201.8
Cmo01g00092 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 69.5 2.0e-51 199.1
Cmo12g01309 CST 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.0e-64 240.7
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.9e-63 238.0
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.1 1.3e-58 223.0
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT4G29340 73.0 5.5e-57 217.6
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT4G29340 71.6 1.3e-55 213.0
Cmo01g00092 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 70.1 4.8e-53 204.5
Cmo14g01321 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.4e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01508 Cmo_Chr11 FPKM 8.88488 8.243861 6.18185 10.188661 11.500127 7.528681 11.632457 7.640588 7.206069 7.969234