Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01508 ATGGCTGATGGTGAAGATATCCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTCGGTCGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCGAAAAGGGGTATTCTTACTTTGAAATACCCAATTGAGCATGGCATTGTGAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAACATCCGGTCCTTCTTACTGAAGCACCGCTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACGTTCGACGTCCCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGAGATGGAGTGAGCCACACAGTGCCAATATATGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATCTAACTGATGCTTTAATGAAAATTCTCACCGAAAGAGGTTACATGTTCACGACAACCGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAAGACTAGTTCGGCCATTGAGAAAAGCTACGAACTACCAGACGGGCAGGTAATTACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTACTTTTCCAGCCATCTCTGATCGGCATGGAATCTCCTGGAATCCATGAAACCACGTATAACTCCATCATGAAGTGTGATGTCGATATCAGGAAAGACTTATACGGTAACATCGTCCTCAGTGGTGGGTCAACGATGTTCCCCGGCATTGCTGATCGTATGAGCAAAGAAATTACCGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCCGAATACGACGAGTCGGGTCCTGCTATCGTTCACAGGAAATGCTTCTGA 1134 47.8 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETAKTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10693121 10696434 - CmoCh11G015080.1 Cmo11g01508 392127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01508 377 Gene3D - 140 340 - -
Cmo11g01508 377 PANTHER ACTIN-2-LIKE 1 376 - -
Cmo11g01508 377 PANTHER ACTIN 1 376 IPR004000 -
Cmo11g01508 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmo11g01508 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmo11g01508 377 Pfam Actin 5 377 IPR004000 -
Cmo11g01508 377 Gene3D - 10 371 - -
Cmo11g01508 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo11g01508 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo11g01508 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmo11g01508 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo11g01508 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmo11g01508 377 PRINTS Actin signature 28 37 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 51 62 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 63 85 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 117 130 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 142 161 IPR004000 -
Cmo11g01508 377 PRINTS Actin signature 238 254 IPR004000 -
Cmo11g01508 377 SMART actin_3 7 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01508 Cmo-Chr11:10693121 Cmo02g00807 Cmo-Chr2:4963969 0 dispersed
Cmo18g00718 Cmo-Chr18:8985471 Cmo11g01508 Cmo-Chr11:10693121 8.74E-63 dispersed
Cmo11g01508 Cmo-Chr11:10693121 Cmo19g00310 Cmo-Chr19:2317534 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01508 K10355 - csv:101214459 753.051