Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01511 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCCGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAGTGTTCTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCGCCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACGAAAGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACAGCTCAACAGCCCCGACCACCGATACCTTTCATGCCATGGCCGCATACTCAAGCTCAGCAGCAGCAGCAACAACAACAAACTCAGCAGCAAAGTGACGCATAG | 810 | 47.53 | MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQPRPPIPFMPWPHTQAQQQQQQQQTQQQSDA | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10721143 | 10721952 | - | CmoCh11G015110.1 | Cmo11g01511 | 392130 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01511 | 269 | SUPERFAMILY | Histone-fold | 67 | 175 | IPR009072 | GO:0046982 | |
Cmo11g01511 | 269 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cmo11g01511 | 269 | Pfam | Core histone H2A/H2B/H3/H4 | 51 | 166 | IPR007125 | GO:0003677 | |
Cmo11g01511 | 269 | MobiDBLite | consensus disorder prediction | 26 | 75 | - | - | |
Cmo11g01511 | 269 | MobiDBLite | consensus disorder prediction | 250 | 269 | - | - | |
Cmo11g01511 | 269 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 258 | - | - | |
Cmo11g01511 | 269 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Cmo11g01511 | 269 | MobiDBLite | consensus disorder prediction | 236 | 269 | - | - | |
Cmo11g01511 | 269 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982 | |
Cmo11g01511 | 269 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 258 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g01156 | Cmo-Chr10:9920448 | Cmo11g01511 | Cmo-Chr11:10721143 | 5.42E-77 | dispersed | |
Cmo11g01160 | Cmo-Chr11:6703878 | Cmo11g01511 | Cmo-Chr11:10721143 | 4.60E-80 | dispersed | |
Cmo11g01511 | Cmo-Chr11:10721143 | Cmo16g00637 | Cmo-Chr16:3143248 | 1.38E-22 | dispersed | |
Cmo20g00514 | Cmo-Chr20:2458626 | Cmo11g01511 | Cmo-Chr11:10721143 | 3.64E-09 | dispersed | |
Cmo11g01511 | Cmo-Chr11:10721143 | Cmo19g00313 | Cmo-Chr19:2356529 | 6.13E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10632 | PF00125 | Histone | 1.00E-17 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01511 | K08066 | - | csv:101213813 | 417.157 |