Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01511 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCCGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAGTGTTCTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCGCCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACGAAAGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACAGCTCAACAGCCCCGACCACCGATACCTTTCATGCCATGGCCGCATACTCAAGCTCAGCAGCAGCAGCAACAACAACAAACTCAGCAGCAAAGTGACGCATAG 810 47.53 MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQPRPPIPFMPWPHTQAQQQQQQQQTQQQSDA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10721143 10721952 - CmoCh11G015110.1 Cmo11g01511 392130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01511 269 SUPERFAMILY Histone-fold 67 175 IPR009072 GO:0046982
Cmo11g01511 269 MobiDBLite consensus disorder prediction 1 19 - -
Cmo11g01511 269 Pfam Core histone H2A/H2B/H3/H4 51 166 IPR007125 GO:0003677
Cmo11g01511 269 MobiDBLite consensus disorder prediction 26 75 - -
Cmo11g01511 269 MobiDBLite consensus disorder prediction 250 269 - -
Cmo11g01511 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 258 - -
Cmo11g01511 269 MobiDBLite consensus disorder prediction 1 75 - -
Cmo11g01511 269 MobiDBLite consensus disorder prediction 236 269 - -
Cmo11g01511 269 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Cmo11g01511 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01156 Cmo-Chr10:9920448 Cmo11g01511 Cmo-Chr11:10721143 5.42E-77 dispersed
Cmo11g01160 Cmo-Chr11:6703878 Cmo11g01511 Cmo-Chr11:10721143 4.60E-80 dispersed
Cmo11g01511 Cmo-Chr11:10721143 Cmo16g00637 Cmo-Chr16:3143248 1.38E-22 dispersed
Cmo20g00514 Cmo-Chr20:2458626 Cmo11g01511 Cmo-Chr11:10721143 3.64E-09 dispersed
Cmo11g01511 Cmo-Chr11:10721143 Cmo19g00313 Cmo-Chr19:2356529 6.13E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10632 PF00125 Histone 1.00E-17 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01511 K08066 - csv:101213813 417.157