Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01513 | ATGATCCCCCAAGCTCCTATTCAGCGACCAAGTTCGTGTTTTCTTTTCCTTTCTGGGCATCGAGAGCCCATTTCCTCCTCCTCCAAGCTCTCGATCCGACCCCCCACATTTCCCCAATTCCCATTTCAAATGGATAACATCACGGCGCAATTAAAGCGCGGAATCTCCCGCCAATTCTCCACTGGTTCTCTCCGCCGTAGTCTTAGCCGCCAATTCTCCCGACAATCCTCTTTAGACCCTCGTCGGAATAATCTAAGATTCAGCTTCGGCCGCCAATCCTCTCTCGACCCTATTCGCCGTTCTCCTGGTGAAGACAATGACCTCTCTGTTCCTGAAAATTTGGACTCCACTATGCAGCTGCTCTTCATGGCTTGTCGTGGCGATGTCCGTGGCGTTCAGGATTTGCTTAATGATGGCACCGATGTTAATAGCATTGATTTGGATGGCCGCACTGCTTTGCATATTGCTGCTTGTGAGGGCCATGCTGAGGTTGTTAAGTTCTTGCTTACCCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATATTATGGGAATATTGAGGTTTACACCATTTTAAAGGCTCGTGGAGCAAAAGTTCAGCAGAGTATTAGGAAGACACCAATGACTGTTGCAAATCCCAGGGAAGTTCCTGAGTATGAGCTTAATCCATCGGAGCTTCAGATTCGAAGGGGTGACGGTATATCAAAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGGCTGTGAAAATTCTTGATAAGGATTGTTATTTTAATCCAGATTCTATAAACGCATTCAAACACGAGTTGACGTTACTCGAAAGGGTTCGACATCCGAACGTAGTTCAGTTTGTCGGGGCCGTTACGCAGAATTTGCCGATGATGATCGTTTCGGAATACCATCCAATGGGTGATTTAGGTTTCTATCTTCAAAAGAAAGGTCGTTTATCTCCGTCTAAAGCCTTACGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGAGCCTATTATCCACTGCGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCATGATAAGATTGTCAAAAATGTCTCCTGATAAAGCAAAACTAGCTCATCCAATTGTTACCGACTCTTCGAACTTGTACTTAGCTCCCGAGATTTACAACGACGAAGTATTTGACAGAAGTGTTGATTCATTTTCGTTTGGTCTCATTCTATACGAGATGGTTGAAGGTATGCAGCCATTCCATCCTAGGCCTCCGGAAGAGGCGTCAAAAGCTATGTGTGTCGAACGAAAGAGACCTCCGTTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATAGAGGAATGCTGGGCTCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTAGATAAAATAGTCACCAACTGCTCGAAACATGGATGGTGGAAAGACACGTTTAAACTTCCCTGGAAATAA | 1554 | 44.59 | MIPQAPIQRPSSCFLFLSGHREPISSSSKLSIRPPTFPQFPFQMDNITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRSPGEDNDLSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKFLLTRKANIDARDRWGSTAAADAKYYGNIEVYTILKARGAKVQQSIRKTPMTVANPREVPEYELNPSELQIRRGDGISKGTYQVAKWNGTKVAVKILDKDCYFNPDSINAFKHELTLLERVRHPNVVQFVGAVTQNLPMMIVSEYHPMGDLGFYLQKKGRLSPSKALRFALDIARGMNYLHECKPEPIIHCDLKPKNILLDNGGQLKVAGFGMIRLSKMSPDKAKLAHPIVTDSSNLYLAPEIYNDEVFDRSVDSFSFGLILYEMVEGMQPFHPRPPEEASKAMCVERKRPPFKIKSKSYPPDLKELIEECWAPEPVVRPTFSEIIVRLDKIVTNCSKHGWWKDTFKLPWK | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10732294 | 10737716 | + | CmoCh11G015130.1 | Cmo11g01513 | 392132 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01513 | 517 | CDD | STKc_MAP3K-like | 243 | 495 | - | - | |
Cmo11g01513 | 517 | Gene3D | Transferase(Phosphotransferase) domain 1 | 313 | 511 | - | - | |
Cmo11g01513 | 517 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 354 | 366 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g01513 | 517 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 74 | 515 | - | - | |
Cmo11g01513 | 517 | ProSiteProfiles | Protein kinase domain profile. | 233 | 508 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01513 | 517 | SMART | serkin_6 | 237 | 499 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01513 | 517 | SMART | ANK_2a | 148 | 177 | IPR002110 | GO:0005515 | |
Cmo11g01513 | 517 | SMART | ANK_2a | 116 | 144 | IPR002110 | GO:0005515 | |
Cmo11g01513 | 517 | ProSiteProfiles | Ankyrin repeat profile. | 148 | 180 | IPR002110 | GO:0005515 | |
Cmo11g01513 | 517 | Gene3D | Phosphorylase Kinase; domain 1 | 229 | 312 | - | - | |
Cmo11g01513 | 517 | SUPERFAMILY | Ankyrin repeat | 116 | 219 | IPR036770 | - | |
Cmo11g01513 | 517 | Pfam | Ankyrin repeats (3 copies) | 123 | 209 | IPR002110 | GO:0005515 | |
Cmo11g01513 | 517 | PIRSF | ILK | 51 | 516 | - | - | |
Cmo11g01513 | 517 | Gene3D | - | 90 | 228 | IPR036770 | - | |
Cmo11g01513 | 517 | SUPERFAMILY | Protein kinase-like (PK-like) | 244 | 495 | IPR011009 | - | |
Cmo11g01513 | 517 | Pfam | Protein tyrosine and serine/threonine kinase | 243 | 494 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01513 | 517 | ProSiteProfiles | Ankyrin repeat region circular profile. | 148 | 180 | - | - | |
Cmo11g01513 | 517 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 74 | 515 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01350 | Cmo-Chr3:9989335 | Cmo11g01513 | Cmo-Chr11:10732294 | 3.70E-132 | dispersed | |
Cmo11g01513 | Cmo-Chr11:10732294 | Cmo19g00317 | Cmo-Chr19:2394226 | 0 | dispersed | |
Cmo11g01513 | Cmo-Chr11:10732294 | Cmo02g00047 | Cmo-Chr2:243063 | 2.58E-132 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74686 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-48 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01513 | - | - | cpep:111792150 | 1013.45 |