Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01513 ATGATCCCCCAAGCTCCTATTCAGCGACCAAGTTCGTGTTTTCTTTTCCTTTCTGGGCATCGAGAGCCCATTTCCTCCTCCTCCAAGCTCTCGATCCGACCCCCCACATTTCCCCAATTCCCATTTCAAATGGATAACATCACGGCGCAATTAAAGCGCGGAATCTCCCGCCAATTCTCCACTGGTTCTCTCCGCCGTAGTCTTAGCCGCCAATTCTCCCGACAATCCTCTTTAGACCCTCGTCGGAATAATCTAAGATTCAGCTTCGGCCGCCAATCCTCTCTCGACCCTATTCGCCGTTCTCCTGGTGAAGACAATGACCTCTCTGTTCCTGAAAATTTGGACTCCACTATGCAGCTGCTCTTCATGGCTTGTCGTGGCGATGTCCGTGGCGTTCAGGATTTGCTTAATGATGGCACCGATGTTAATAGCATTGATTTGGATGGCCGCACTGCTTTGCATATTGCTGCTTGTGAGGGCCATGCTGAGGTTGTTAAGTTCTTGCTTACCCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATATTATGGGAATATTGAGGTTTACACCATTTTAAAGGCTCGTGGAGCAAAAGTTCAGCAGAGTATTAGGAAGACACCAATGACTGTTGCAAATCCCAGGGAAGTTCCTGAGTATGAGCTTAATCCATCGGAGCTTCAGATTCGAAGGGGTGACGGTATATCAAAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGGCTGTGAAAATTCTTGATAAGGATTGTTATTTTAATCCAGATTCTATAAACGCATTCAAACACGAGTTGACGTTACTCGAAAGGGTTCGACATCCGAACGTAGTTCAGTTTGTCGGGGCCGTTACGCAGAATTTGCCGATGATGATCGTTTCGGAATACCATCCAATGGGTGATTTAGGTTTCTATCTTCAAAAGAAAGGTCGTTTATCTCCGTCTAAAGCCTTACGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGAGCCTATTATCCACTGCGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCATGATAAGATTGTCAAAAATGTCTCCTGATAAAGCAAAACTAGCTCATCCAATTGTTACCGACTCTTCGAACTTGTACTTAGCTCCCGAGATTTACAACGACGAAGTATTTGACAGAAGTGTTGATTCATTTTCGTTTGGTCTCATTCTATACGAGATGGTTGAAGGTATGCAGCCATTCCATCCTAGGCCTCCGGAAGAGGCGTCAAAAGCTATGTGTGTCGAACGAAAGAGACCTCCGTTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATAGAGGAATGCTGGGCTCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTAGATAAAATAGTCACCAACTGCTCGAAACATGGATGGTGGAAAGACACGTTTAAACTTCCCTGGAAATAA 1554 44.59 MIPQAPIQRPSSCFLFLSGHREPISSSSKLSIRPPTFPQFPFQMDNITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRSPGEDNDLSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKFLLTRKANIDARDRWGSTAAADAKYYGNIEVYTILKARGAKVQQSIRKTPMTVANPREVPEYELNPSELQIRRGDGISKGTYQVAKWNGTKVAVKILDKDCYFNPDSINAFKHELTLLERVRHPNVVQFVGAVTQNLPMMIVSEYHPMGDLGFYLQKKGRLSPSKALRFALDIARGMNYLHECKPEPIIHCDLKPKNILLDNGGQLKVAGFGMIRLSKMSPDKAKLAHPIVTDSSNLYLAPEIYNDEVFDRSVDSFSFGLILYEMVEGMQPFHPRPPEEASKAMCVERKRPPFKIKSKSYPPDLKELIEECWAPEPVVRPTFSEIIVRLDKIVTNCSKHGWWKDTFKLPWK 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10732294 10737716 + CmoCh11G015130.1 Cmo11g01513 392132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01513 517 CDD STKc_MAP3K-like 243 495 - -
Cmo11g01513 517 Gene3D Transferase(Phosphotransferase) domain 1 313 511 - -
Cmo11g01513 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Cmo11g01513 517 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 74 515 - -
Cmo11g01513 517 ProSiteProfiles Protein kinase domain profile. 233 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01513 517 SMART serkin_6 237 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01513 517 SMART ANK_2a 148 177 IPR002110 GO:0005515
Cmo11g01513 517 SMART ANK_2a 116 144 IPR002110 GO:0005515
Cmo11g01513 517 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Cmo11g01513 517 Gene3D Phosphorylase Kinase; domain 1 229 312 - -
Cmo11g01513 517 SUPERFAMILY Ankyrin repeat 116 219 IPR036770 -
Cmo11g01513 517 Pfam Ankyrin repeats (3 copies) 123 209 IPR002110 GO:0005515
Cmo11g01513 517 PIRSF ILK 51 516 - -
Cmo11g01513 517 Gene3D - 90 228 IPR036770 -
Cmo11g01513 517 SUPERFAMILY Protein kinase-like (PK-like) 244 495 IPR011009 -
Cmo11g01513 517 Pfam Protein tyrosine and serine/threonine kinase 243 494 IPR001245 GO:0004672|GO:0006468
Cmo11g01513 517 ProSiteProfiles Ankyrin repeat region circular profile. 148 180 - -
Cmo11g01513 517 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 74 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01350 Cmo-Chr3:9989335 Cmo11g01513 Cmo-Chr11:10732294 3.70E-132 dispersed
Cmo11g01513 Cmo-Chr11:10732294 Cmo19g00317 Cmo-Chr19:2394226 0 dispersed
Cmo11g01513 Cmo-Chr11:10732294 Cmo02g00047 Cmo-Chr2:243063 2.58E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74686 PF07714 PK_Tyr_Ser-Thr 2.10E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01513 - - cpep:111792150 1013.45