Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01540 ATGGATTGTGATATCATGACGAGTGATAAGCCTCATGCTGTGTGCATCCCAGTTCCACTTCTAAGTCATGTTATGGCAATGCTAAATGTTGCAAAACTTCTCCACCAAAGAGGCTTTTCCATAACATTTGTCATCACAGACTATGTTCATAAGCGCATAATCAAGTCAAGAGGCCCCAATTCTCTTGATGGCATTCTTAACTTTCAGTTCAAAACCATTGCCGATGGTATTATGGCGCAGGGCACTGATATTGAGGCACCACAGGACATGGCCTCTATTTGTATCGCCATTTCTAACAATTTCTTAGCTCCATTTCGTAGCCTACTTTCTCAACTCAATCATGAGGCTACTCCGCCAGTTAGTTGTATTGTTAGTGATGGTGGTTTGTCGTCGTTCACCATTAAAGCTGCCATGGAATTTAACATTCCTATTGCACACTTGTGGTCTGTTAGTCCTTGCAGCTTTCTGGGTTTTATGCATTTTGGTGATCTTGTCAAGCGAGGGGTGATTCCATTTAAAGATGAGAGCTATTTAAGCAATGACTATCTCAATACTACTATAGATTGGATTCCAGGGATGAAGAGTATAAGACTTAAAGATCTACCAAGTTTCATTCGAACAAATCATGAAGTTTTGGATGCTCTTTCTTCGATGCTTCCTCCAATTTATACTATTGGTCCACATCACTTACTTTCAAGGCAAATCAAGGACCAAAGTGAAGAAGCAATAGCTACAAATTATTGGGAAGATAATCATGAGTGCATCACATGGCTTGATTCCAAGGAACCCAACTCAGTTATTTACGTAAATTTTGGAAGCATAACTATAATGACATTTAACCAAATCACTGAGTTTGCATGGGGCCTTGCAAATAGCAAACAACCCTTTTTATGGATCATAAGGCCTGATCTTGTCAACAGCGATTCACCCATTTTATCCCATAGTTTTCTTGAAGAAACAAAGGGAATTGGGATGATAGCTAGCTGGTGTGCTCAAGAGGAGGTTCTAAAGCACCCATCAATAAAAGGGTTTTTAACTCATAATGGATGGAATTCAACACTTGAAAGCATATGTGGTGGAGTGCCAATGATATCATGGCCATACTTCGCCGATCAACCAACAACTTGTCTATATTGTTGTGAGAAATGGGGCATTGCATTGGAAATAGATAATGATGTGAAGAGAGATGGAGTTGAGAGTTGTATCAAAGAGCTTATGGAAGGAAAGAAAGGCGAAGACATGAAAGCCAAAGTTATGGAGTTGAAAAGAAAAGCTGAGGAATCATGTAGACATGGAGGCTCTTCTTACTTTAACTTGGACAAGCTAATAACCGACGTCCTATTATCGAAATGCTATGGTGAAGTGAAGTAG 1371 39.68 MDCDIMTSDKPHAVCIPVPLLSHVMAMLNVAKLLHQRGFSITFVITDYVHKRIIKSRGPNSLDGILNFQFKTIADGIMAQGTDIEAPQDMASICIAISNNFLAPFRSLLSQLNHEATPPVSCIVSDGGLSSFTIKAAMEFNIPIAHLWSVSPCSFLGFMHFGDLVKRGVIPFKDESYLSNDYLNTTIDWIPGMKSIRLKDLPSFIRTNHEVLDALSSMLPPIYTIGPHHLLSRQIKDQSEEAIATNYWEDNHECITWLDSKEPNSVIYVNFGSITIMTFNQITEFAWGLANSKQPFLWIIRPDLVNSDSPILSHSFLEETKGIGMIASWCAQEEVLKHPSIKGFLTHNGWNSTLESICGGVPMISWPYFADQPTTCLYCCEKWGIALEIDNDVKRDGVESCIKELMEGKKGEDMKAKVMELKRKAEESCRHGGSSYFNLDKLITDVLLSKCYGEVK 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11014360 11016706 + CmoCh11G015400.1 Cmo11g01540 392159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01540 456 Gene3D Glycogen Phosphorylase B; 12 443 - -
Cmo11g01540 456 PANTHER GLYCOSYLTRANSFERASE 10 207 - -
Cmo11g01540 456 PANTHER GLYCOSYLTRANSFERASE 208 447 - -
Cmo11g01540 456 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 250 421 IPR002213 GO:0008194
Cmo11g01540 456 PANTHER GLYCOSYLTRANSFERASE 10 207 - -
Cmo11g01540 456 PANTHER GLYCOSYLTRANSFERASE 208 447 - -
Cmo11g01540 456 Gene3D Glycogen Phosphorylase B; 252 428 - -
Cmo11g01540 456 CDD GT1_Gtf-like 11 427 IPR002213 GO:0008194
Cmo11g01540 456 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01540 - - - cmos:111434482 941.799
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01538 Cmo-Chr11:10994467 Cmo11g01540 Cmo-Chr11:11014360 0 dispersed
Cmo11g01540 Cmo-Chr11:11014360 Cmo19g00262 Cmo-Chr19:1921731 0 dispersed
Cmo11g01540 Cmo-Chr11:11014360 Cmo11g01542 Cmo-Chr11:11032751 1.05E-97 proximal
Cmo11g01539 Cmo-Chr11:11006073 Cmo11g01540 Cmo-Chr11:11014360 4.12E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1016 . . . . . . . . . Cmo11g01540 . . . . . . . Bhi05g00875 . . . . . . . . . . . . . . . . . Lsi03g00751 Csa07g00560 . Cme01g00229 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01528 . . . . . . . . Chy01g00245 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000021 5 17 7 7 3 17 0 19 18 19 14 15 15 14 14 23 17 21 4 16 18 8 11 15 18 23 14 16 17 12 417
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01540 Cmo_Chr11 FPKM 52.345108 58.216774 36.286758 38.29937 39.519382 36.451363 42.001186 52.593342 52.054344 55.302139