Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01570 ATGTCCATCCTGCCTTCACAAATCCAGGGTTCCACTTCAACATCTTCTTCGTCTTCAGCTTCCTCTCTAAACCCTAATTCCCACCATGGAACCGGCCCCCTCTTCTCTCAATCCACTCTCTCTCCCACGCATTCCTTTCCATCCCCACGGATTTCCGATCCCCATTCGTCTCTCGGGGATTCCTGCAACGTATCAGGCCTGTCGATTAAACCTGCAGATGATGCTGAATCTTCCAAGAAGAGCCAATCTGGTGTAGAAGATGGTGGATCAGTCCTTCCCGGGAGTAAAATATCGTCTTCTATAATTTCTTCTCATGATCAGCAAAGCGCTAGGTCTGCAAACTCTCATGGCAATAATAAACGCTCAGCTGGAAGAAAAGCCCAAATGACAAATGGAAACCATTTGCTTAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCGAGCCAGAGCTCCTCCTCCAAGAAGGCCACATAAGATAAAGCCATACAACAAGGATCTATTTCTCCAGGCTAATTACAAATTTGTGGTTTTAGATACAGGTTATCATACGCCTGAATATTTGGATCCTGATAAAATGCTGCGTTGGGAGGATATCATATGTGTAAGATATTCTACACCATCATTGGTTCAATGTCCTATTTGTCTGGAGCATCCACACTGTCCTCAAATTACCTCGTGTGGACATATTTATTGTTTCCCTTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCAGAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGCTGTCTTTGAAGGATTTATACACCGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGAATTTATGCTTTTAACTCGGCAAAAAGATTCATTTGCCTTATCATTCAAGGATAAACAAGAGGATGGTATCAGGTCAAGTGATAACGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGCAAGCAATATCTGATTTAGATGCCTGGTTAGCAAAAGCAGAAACAGGGCAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTAGAGCAGAGGAAGAAGGATTGGAATGAACTTCAGGCCTGTTTTAAGCAGAATGACTGTCAGATAAGATCTCAAACGCTCCTTCCAACTGGTAATGTTAGCAATGCTGGTCCTGGAGCATGCAGTTCTAGACACGAGGCTTCATCCATTGATATTAATGATGATTGCAAGTTTCTAGGAAATGTAGTGCAAGATAAGTTGGATTATTCTACTCATGTGGGTCAGACTGAGGCTGTTGATGAACTTTTAGAACTCCAACAAAACTCAAATGAAATTAGAGATGCAAAGGACAAGGACTCGTACAATTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAATATTATGGGAGTTATGGCAGACTGCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACAGTCACCCAAACCGAGGCCACAAGAAGGCGGTATCGTTACTTGAGTCATTTTTCCTTAACAACATCGTTTCAGCTATGTGAAATTGATTTGACCAACCTGTTGCCTTCGTCCTCCATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGCAAAGGGAGAAGATCAAAGCAGAATCTGCTTCAACGTGTTCTTTGTCAATGATGGCCGGATCAGGAAGTTCATATCGTTATGATACTCCAAACCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTTGGCGTGAGGCAACTGTTCTCGAGCGTTACACGACTTGGTTTCGCTGCTGCACATGATTCTCCGTCCTTGAGAATTGAAGAAACTGATTCTCTGCACATTAATGAAGTGAAAAGTGATTCATCCGGTGCAAATGAGATACACAATGCAACTCCATCGTTTGCGAATATAATATCGAGAGCGAAGTCTGGAGGAAGTACAGAATCTCCTAAGGCAAATGAAGTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTTTGTTATCCACGGCGGGCGGGCGGCGCTATTGA 2160 42.45 MSILPSQIQGSTSTSSSSSASSLNPNSHHGTGPLFSQSTLSPTHSFPSPRISDPHSSLGDSCNVSGLSIKPADDAESSKKSQSGVEDGGSVLPGSKISSSIISSHDQQSARSANSHGNNKRSAGRKAQMTNGNHLLNFQYDPISRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDTGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPHCPQITSCGHIYCFPCILRYLLMGKEDQKGDCWKKCPLCFVMLSLKDLYTVHIELLKQYSVGDTIEFMLLTRQKDSFALSFKDKQEDGIRSSDNDEIYDSFSKFIFTSDVDLSVRQAISDLDAWLAKAETGQVDDLEKLPYVCAALEQLEQRKKDWNELQACFKQNDCQIRSQTLLPTGNVSNAGPGACSSRHEASSIDINDDCKFLGNVVQDKLDYSTHVGQTEAVDELLELQQNSNEIRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQYYGSYGRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLAKKMQREKIKAESASTCSLSMMAGSGSSYRYDTPNLSLDDFEALGSSPVTSSSPPVGVRQLFSSVTRLGFAAAHDSPSLRIEETDSLHINEVKSDSSGANEIHNATPSFANIISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11296748 11302357 + CmoCh11G015700.1 Cmo11g01570 392189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01570 719 SMART ring_2 213 259 IPR001841 -
Cmo11g01570 719 Coils Coil 366 386 - -
Cmo11g01570 719 PANTHER RING FINGER 10 FAMILY MEMBER 106 715 IPR039739 -
Cmo11g01570 719 MobiDBLite consensus disorder prediction 684 719 - -
Cmo11g01570 719 Pfam Zinc finger, C3HC4 type (RING finger) 213 259 IPR018957 GO:0046872
Cmo11g01570 719 CDD RING-HC_RNF10 213 260 - -
Cmo11g01570 719 MobiDBLite consensus disorder prediction 93 138 - -
Cmo11g01570 719 MobiDBLite consensus disorder prediction 1 64 - -
Cmo11g01570 719 ProSiteProfiles Zinc finger RING-type profile. 213 259 IPR001841 -
Cmo11g01570 719 Coils Coil 556 579 - -
Cmo11g01570 719 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Cmo11g01570 719 SUPERFAMILY RING/U-box 208 272 - -
Cmo11g01570 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 296 IPR013083 -
Cmo11g01570 719 MobiDBLite consensus disorder prediction 1 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01570 Cmo-Chr11:11296748 Cmo03g01256 Cmo-Chr3:9632303 8.68E-07 dispersed
Cmo11g01570 Cmo-Chr11:11296748 Cmo06g00101 Cmo-Chr6:579015 4.43E-07 transposed
Cmo11g01570 Cmo-Chr11:11296748 Cmo14g00414 Cmo-Chr14:1972635 4.86E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01570 - - csv:101203987 1154.43