Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01574 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGACGACGTCGCTTCTTGGACCAGAGCCACCGACGACCACTACGACGATATCGCCATTGCCGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCTGACTGTTTCATTAACTCTTCTTCTGCTCCTCTCAACTCCTCTCTCCATCGTTTCAATCCCACTGATAACTTCCTCTCTTCCTGCTCTCCCTCCCAACCTTTTGCTCTCGATCCTACCCAGTCTATGTTGCCTTCTCACAAATCCTGTTTCTCTTCTCTTCTTAATGTTGTTTGCGGCAGTAATTTCGATAATGCCTATGATTTTGGCGCCGATACTGCTTTGTTTGGATCTTACCAGGGGAATCAAGCTTCCAATCCCTCCGTTTTCATGGGATTCACTGGCGTTTCTCCTCTTCCTCAAATCGGTAACCAGGCGCTTAGCTTAAATCATTCTGAGTTTCCGGTTGCTGATAACCCTCCCGCTTTTGGCGATGGATTTAATCCGGCGGTTCCGTTTGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAATAGGCCTAAGGTTTTGAGACCTCTTGAAGTGCTCCCGCAAGTCGGTGCTCAACCGACGCTGTTTCAGAAGCGAGCGGCGCACCGAGTTGTCTCTCCCGGAGCTGATAAACTTGAGAATCTGGAGGTTTCGGGTTTGAAATTTGGAGAAGGCTCAACGTGGACGGCGGATTTGGAGAATCTGAGTAAGAACAACGGCGATGAGGACGGTGAGGATGATAGCGTGGATGTTTCTCGGTTTAATTACGACTCCGATGAAGGCAATGAGTATAACAAGCAAGAGGACAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGCACTGTAACCGGCGGCGACCAAAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATCCTTGGAGACGCCATAGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAATCGACTCCTTCTGGTTCTTCGCTGCAACCTTCTGCAAGCTTTCACCCTTTGACGCCAACGCTGCCAACTCTTCCCTGTCGTGTCAAGGAGGAGCTGTGTCCAAGCTCCTCCTTGTGCAGCCCCAAAAATCAGCCTGCCAGGGTCGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTCTGTTCTTGCAAGCCCGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAGCCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTGGACGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCATACCTGAGCAAATAAAAGCAGTGCTGTTGGAATCAGCTGGCTTACATGGTGTTATGTAG 1521 49.18 MLPKSTGILWLDGDHDDVASWTRATDDHYDDIAIAGSISSFKSMLEPDCFINSSSAPLNSSLHRFNPTDNFLSSCSPSQPFALDPTQSMLPSHKSCFSSLLNVVCGSNFDNAYDFGADTALFGSYQGNQASNPSVFMGFTGVSPLPQIGNQALSLNHSEFPVADNPPAFGDGFNPAVPFESFDGCGNALFQNRPKVLRPLEVLPQVGAQPTLFQKRAAHRVVSPGADKLENLEVSGLKFGEGSTWTADLENLSKNNGDEDGEDDSVDVSRFNYDSDEGNEYNKQEDNVNAKNCGSNSNANSTVTGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPSGSSLQPSASFHPLTPTLPTLPCRVKEELCPSSSLCSPKNQPARVEVRVREGRAVNIHMFCSCKPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQSKEGQEIIPEQIKAVLLESAGLHGVM 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11313928 11317167 - CmoCh11G015740.1 Cmo11g01574 392193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01574 506 Pfam Helix-loop-helix DNA-binding domain 321 363 IPR011598 GO:0046983
Cmo11g01574 506 Gene3D - 308 378 IPR036638 GO:0046983
Cmo11g01574 506 CDD bHLH_AtAMS_like 317 382 - -
Cmo11g01574 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Cmo11g01574 506 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 74 506 - -
Cmo11g01574 506 MobiDBLite consensus disorder prediction 285 307 - -
Cmo11g01574 506 MobiDBLite consensus disorder prediction 276 315 - -
Cmo11g01574 506 Coils Coil 357 377 - -
Cmo11g01574 506 CDD ACT_UUR-ACR-like 442 495 - -
Cmo11g01574 506 PANTHER BHLH TRANSCRIPTIONAL FACTOR 74 506 - -
Cmo11g01574 506 ProSiteProfiles ACT domain profile. 434 506 IPR002912 -
Cmo11g01574 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 381 IPR036638 GO:0046983
Cmo11g01574 506 SMART finulus 320 369 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01574 Cmo14g00777 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03004 Cmo-Chr4:21138937 Cmo11g01574 Cmo-Chr11:11313928 1.51E-10 dispersed
Cmo11g01574 Cmo-Chr11:11313928 Cmo13g00860 Cmo-Chr13:7869398 3.52E-136 dispersed
Cmo11g01574 Cmo-Chr11:11313928 Cmo14g00777 Cmo-Chr14:3943672 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10635 PF00010 HLH 2.00E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01574 - - bhj:120082707 755.362