Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g01602 | ATGGATCCTAAAACTTCATCATCAACAACAAAGCAGCCCCAAGAACTGGTACCAAACTTTTTGAACTTCCCACAAGAACAATCAATCATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGTCGAAGAATCCGTATGCCGGCACTATGTGCGGCGAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGAGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGATTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGGAGACCCCATTTGGCTGCTGCTGCTGCCGCCGCCGCCGCAGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTCTAGGTGCCAACTCTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGGTGTGATTATCTGCAACTTAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTCTGTTTGTTTCTCTATTCAAAAGGCGTGTTGATCATGTTGACATCCTTGTTGTCAAGCATGCAATGAATCTAGCATGCGTGGAAATTACAACTATGGGCAGGATTGAGCGTTCAGATCTAAAAGACATCTAA | 1065 | 47.23 | MDPKTSSSTTKQPQELVPNFLNFPQEQSIMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANSQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSGCDYLQLRAAWLELNFIFLFVSLFKRRVDHVDILVVKHAMNLACVEITTMGRIERSDLKDI | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 11466057 | 11468392 | - | CmoCh11G016020.1 | Cmo11g01602 | 392221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g01602 | 354 | MobiDBLite | consensus disorder prediction | 272 | 292 | - | - | |
| Cmo11g01602 | 354 | ProSiteProfiles | TCP domain profile. | 53 | 107 | IPR017887 | - | |
| Cmo11g01602 | 354 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 33 | 294 | IPR005333 | GO:0003700 | |
| Cmo11g01602 | 354 | Pfam | TCP family transcription factor | 52 | 142 | IPR017887 | - | |
| Cmo11g01602 | 354 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Cmo11g01602 | 354 | MobiDBLite | consensus disorder prediction | 33 | 66 | - | - | |
| Cmo11g01602 | 354 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Cmo11g01602 | 354 | PANTHER | TRANSCRIPTION FACTOR TCP20-LIKE | 33 | 294 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g01219 | Cmo-Chr3:9440239 | Cmo11g01602 | Cmo-Chr11:11466057 | 8.13E-39 | dispersed | |
| Cmo07g00937 | Cmo-Chr7:4503141 | Cmo11g01602 | Cmo-Chr11:11466057 | 4.91E-38 | dispersed | |
| Cmo11g01602 | Cmo-Chr11:11466057 | Cmo17g01372 | Cmo-Chr17:10656012 | 3.81E-61 | dispersed | |
| Cmo13g01176 | Cmo-Chr13:9377630 | Cmo11g01602 | Cmo-Chr11:11466057 | 1.16E-38 | dispersed | |
| Cmo11g01602 | Cmo-Chr11:11466057 | Cmo14g00744 | Cmo-Chr14:3809147 | 2.47E-150 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10638 | PF03634 | TCP | 1.10E-30 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g01602 | - | - | cmax:111486688 | 569.696 |