Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01608 ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACATAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTACGAGAACTGAAGAAAACTCATCTTTGATTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTTCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG 1041 45.34 MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEQILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPTRTEENSSLIPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11516749 11518271 + CmoCh11G016080.1 Cmo11g01608 392227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01608 346 Gene3D - 58 127 IPR036893 GO:0003677|GO:0005634
Cmo11g01608 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 322 IPR044817 GO:0003677
Cmo11g01608 346 Pfam SBP domain 66 139 IPR004333 GO:0003677
Cmo11g01608 346 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Cmo11g01608 346 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 39 322 - -
Cmo11g01608 346 MobiDBLite consensus disorder prediction 16 56 - -
Cmo11g01608 346 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01608 Cmo14g00739 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01608 Cmo-Chr11:11516749 Cmo17g01376 Cmo-Chr17:10690874 3.55E-49 dispersed
Cmo10g00045 Cmo-Chr10:218946 Cmo11g01608 Cmo-Chr11:11516749 4.32E-42 wgd
Cmo11g00026 Cmo-Chr11:113484 Cmo11g01608 Cmo-Chr11:11516749 3.00E-32 wgd
Cmo11g01608 Cmo-Chr11:11516749 Cmo14g00739 Cmo-Chr14:3774412 1.47E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10640 PF03110 SBP 3.10E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01608 - - bhj:120070162 519.62