Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01608 ATGGATTGGGGTTGGAGAAAATTTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACATAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTACGAGAACTGAAGAAAACTCATCTTTGATTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCGAATAACTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTTCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG 1041 45.34 MDWGWRKFSGERVTFQENKQNPTSFSDSIGSNNEEQILKGSSQESSTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPTRTEENSSLIPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDAISQVSEGDSQKTVPPNNSPEDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11516749 11518271 + CmoCh11G016080.1 Cmo11g01608 392227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01608 346 Gene3D - 58 127 IPR036893 GO:0003677|GO:0005634
Cmo11g01608 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 322 IPR044817 GO:0003677
Cmo11g01608 346 Pfam SBP domain 66 139 IPR004333 GO:0003677
Cmo11g01608 346 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Cmo11g01608 346 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 39 322 - -
Cmo11g01608 346 MobiDBLite consensus disorder prediction 16 56 - -
Cmo11g01608 346 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01608 - - - bhj:120070162 519.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01608 Cmo14g00739 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01608 Cmo-Chr11:11516749 Cmo17g01376 Cmo-Chr17:10690874 3.55E-49 dispersed
Cmo10g00045 Cmo-Chr10:218946 Cmo11g01608 Cmo-Chr11:11516749 4.32E-42 wgd
Cmo11g00026 Cmo-Chr11:113484 Cmo11g01608 Cmo-Chr11:11516749 3.00E-32 wgd
Cmo11g01608 Cmo-Chr11:11516749 Cmo14g00739 Cmo-Chr14:3774412 1.47E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50670 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50670 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50670 64.1 4.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10640 PF03110 SBP 3.10E-30 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01608 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0