Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01624 ATGCCGGAAGAAACCACTTCGATAGATTACGTCATGGAAGCCGCCTCCGGACCTCATTTCTCCGGCCTCCGACTCGACGGGCTTATCTCCTCTCCACCTTCTTCCTCAACTTCTTCTCCCGCTCACCGCTCTTCACTCTCCGCTTCCTCTGCACAGGTCGATGCTAACTCTCCTAAGCAGCCTTTCGTCATCGGTGTTTCTGGAGGTACTGCGTCTGGGAAGACGACGGTGTGTGATATGATTATACAGCAACTCCATGATCATAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGTTTGACAGCCGAGGAACTAGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTTTGGATTGCGTCGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAGACTCATCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCTGATGTTATCATCGTGGAAGGGATTCTGGTTTTCCATGACCAAAGAGTCCGCAATCTCATGAATATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACCGTAGAAAGAGGCAGAGACATTAACTCCGTTCTTGAACAGTATGCGAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGAGGCGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACGAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAATCAACATTTCAGATTAGAGGCATGCATACATTAATTCGAGATCGGGACATCTCAAAGCACGATTTTGTTTTCTATTCAGACCGCCTTATACGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCGTTTACTGAAAAACAAGTGGTCACTCCAACAGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAATGCGTTGCGTGCATGTTGCAAAGGGATAAAAATCGGGAAGATTCTGATTCACCGTGAGGGAGATAACGGGAAGCAGCTGATATACGAGAAATTACCCAATGATATATCGGAGCGACATGTCCTACTCCTAGACCCCGTTCTCGCTACCGGTAACTCAGCTAACCAAGCAATTGACCTACTCATACAGAAGGGAGTTCCAGAATCACACATCATATTCCTCAACTTGATATCTGCCCCGGAGGGAATTCACTGTGTTTGCAAACGATACCCGTTCTTGAAAATTGTCACTTCCGAGATCGACGATGGATTGAACGAAGAGTATCGTGTCGTACCAGGTATGGGTGAATTTGGCGATCGTTACTTTGGAACCGATGATTAG 1449 45.34 MPEETTSIDYVMEAASGPHFSGLRLDGLISSPPSSSTSSPAHRSSLSASSAQVDANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLLDCVEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASDVIIVEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRYPFLKIVTSEIDDGLNEEYRVVPGMGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11584968 11589812 - CmoCh11G016240.1 Cmo11g01624 392243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01624 482 CDD UMPK 63 261 IPR000764 -
Cmo11g01624 482 MobiDBLite consensus disorder prediction 23 53 - -
Cmo11g01624 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Cmo11g01624 482 TIGRFAM udk: uridine kinase 60 261 IPR000764 -
Cmo11g01624 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Cmo11g01624 482 PANTHER URIDINE KINASE 16 479 - -
Cmo11g01624 482 PRINTS Uridine kinase signature 61 78 - -
Cmo11g01624 482 PRINTS Uridine kinase signature 91 102 - -
Cmo11g01624 482 PRINTS Uridine kinase signature 136 151 - -
Cmo11g01624 482 PRINTS Uridine kinase signature 193 203 - -
Cmo11g01624 482 PRINTS Uridine kinase signature 207 218 - -
Cmo11g01624 482 PRINTS Uridine kinase signature 229 242 - -
Cmo11g01624 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Cmo11g01624 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Cmo11g01624 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Cmo11g01624 482 Gene3D - 265 480 IPR029057 -
Cmo11g01624 482 CDD PRTases_typeI 338 453 IPR000836 -
Cmo11g01624 482 Gene3D - 57 264 IPR027417 -
Cmo11g01624 482 MobiDBLite consensus disorder prediction 28 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01624 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00411 Cmo-Chr1:2001619 Cmo11g01624 Cmo-Chr11:11584968 0 dispersed
Cmo01g01098 Cmo-Chr1:9132957 Cmo11g01624 Cmo-Chr11:11584968 0 dispersed
Cmo02g00920 Cmo-Chr2:5659761 Cmo11g01624 Cmo-Chr11:11584968 2.90E-10 dispersed
Cmo03g00417 Cmo-Chr3:4898332 Cmo11g01624 Cmo-Chr11:11584968 3.00E-17 dispersed
Cmo10g00287 Cmo-Chr10:1278350 Cmo11g01624 Cmo-Chr11:11584968 6.37E-16 dispersed
Cmo11g00243 Cmo-Chr11:1213084 Cmo11g01624 Cmo-Chr11:11584968 2.26E-16 dispersed
Cmo11g01624 Cmo-Chr11:11584968 Cmo18g01092 Cmo-Chr18:11420299 4.85E-17 dispersed
Cmo16g01248 Cmo-Chr16:8908808 Cmo11g01624 Cmo-Chr11:11584968 3.43E-14 dispersed
Cmo11g01624 Cmo-Chr11:11584968 Cmo09g01036 Cmo-Chr9:5556538 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1190 . . . . . . . . . Cmo11g01624 . . Car11g01317 . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo20g00810 CST 79 559 PRT Gene Family AT2G16570 84.5 1.1e-239 826.6
Cmo02g00360 CST 70 556 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cmo02g00360 CST 72 556 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cmo20g00810 CST 79 559 PRT Gene Family AT4G34740 85.3 7.4e-241 830.5
Cmo20g00810 CST 57 532 PRT Gene Family AT4G38880 72.9 1.1e-198 690.3
Cmo02g00360 CST 69 529 PRT Gene Family AT4G38880 73.0 2.2e-194 676.0
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo15g01204 . 5 97 PRT Gene Family AT4G22570 86.0 2.1e-43 172.2
Cmo16g01113 . 6 97 PRT Gene Family AT4G22570 87.0 6.0e-43 170.6
Cmo06g00788 . 5 104 PRT Gene Family AT4G22570 78.0 6.7e-42 167.2
Cmo12g00534 CST 80 170 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cmo05g00378 CST 63 152 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo12g00294 CST 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo15g01204 . 1 96 PRT Gene Family AT4G12440 83.3 2.6e-40 161.8
Cmo06g00788 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cmo16g01113 . 1 96 PRT Gene Family AT4G12440 81.3 2.8e-39 158.3
Cmo12g00534 CST 74 169 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cmo05g00378 CST 56 151 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo09g01036 . 151 603 PRT Gene Family AT1G55810 85.5 2.3e-224 775.4
Cmo01g01098 . 81 537 PRT Gene Family AT1G55810 83.4 2.0e-220 762.3
Cmo11g01624 . 19 482 PRT Gene Family AT1G55810 75.1 4.2e-202 701.4
Cmo01g00411 . 19 482 PRT Gene Family AT1G55810 74.0 6.7e-200 694.1
Cmo09g01036 . 200 602 PRT Gene Family AT3G27440 77.2 1.3e-184 643.3
Cmo01g01098 . 131 550 PRT Gene Family AT3G27440 74.6 3.1e-183 638.6
Cmo11g01624 . 80 482 PRT Gene Family AT3G27440 75.4 1.1e-180 630.2
Cmo01g00411 . 80 482 PRT Gene Family AT3G27440 74.4 6.7e-178 620.9
Cmo11g01624 . 1 482 PRT Gene Family AT3G27190 86.5 1.1e-248 856.3
Cmo01g00411 . 1 482 PRT Gene Family AT3G27190 85.5 2.8e-244 841.6
Cmo09g01036 . 138 602 PRT Gene Family AT3G27190 72.9 3.7e-204 708.4
Cmo01g01098 . 68 536 PRT Gene Family AT3G27190 72.7 4.8e-204 708.0
Cmo03g00417 . 4 289 PRT Gene Family AT3G53900 66.0 7.4e-107 384.4
Cmo09g01036 . 136 603 PRT Gene Family AT4G26510 83.4 2.2e-230 795.4
Cmo01g01098 . 66 537 PRT Gene Family AT4G26510 82.3 6.4e-230 793.9
Cmo11g01624 . 7 482 PRT Gene Family AT4G26510 76.1 1.2e-212 736.5
Cmo01g00411 . 11 482 PRT Gene Family AT4G26510 75.0 2.5e-210 728.8
Cmo11g01624 . 1 482 PRT Gene Family AT5G40870 86.5 8.4e-249 856.7
Cmo01g00411 . 1 482 PRT Gene Family AT5G40870 85.9 1.1e-243 839.7
Cmo09g01036 . 179 605 PRT Gene Family AT5G40870 78.9 8.2e-204 707.2
Cmo01g01098 . 68 539 PRT Gene Family AT5G40870 71.5 3.1e-203 705.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01624 Cmo_Chr11 FPKM 25.476391 26.989403 21.161629 19.969444 15.549107 16.003325 14.649996 15.947196 15.250994 14.109073