Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01659 | ATGGATTCTGGTAATGGGTTTTATTCAACTGGTGAATTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCGAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATTAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATAGCTAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACCGAATTACTTACAGGTGGAACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCCTGGAACTTGACGTTGCGATCGGGTTTGCGCTTGATATTGCTCGTGCAGTGGAGTGTTTACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCTAGAGAAGAATCAGTCACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCGGAGCTCTATAGCACAGTAACTTTAAAACATGGAGATAAAAAGCATTACAATCATAAAGTTGATGCTTACAGCTTTGCCATTGTATTGTGGGAGCTCATTCTTAACAGGTTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCATATGCAGCTGCTTTTAAGAACATGAGGCCTAGTGCTGAAAATCTTCCAGAAGACTTGGCTTTAATAGTGACATCATGTTGGAGAGAGGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAGTCCCTTTCTAAAATATCACCACGAGCACCTGCGATCCCACCTCGGATATGTGCTGAAGATGTCGTTATGCCACCCGAATCTCCCAGTACAAATTCCTTGATGGCTGTAAGGCACGGCTCGGGGGAAGCGTCACACGGCATGATCGAAGAAAACCCAACAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA | 1056 | 43.66 | MDSGNGFYSTGEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERIARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAVECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSKISPRAPAIPPRICAEDVVMPPESPSTNSLMAVRHGSGEASHGMIEENPTSSFFCFNKCY | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11780192 | 11784215 | - | CmoCh11G016590.1 | Cmo11g01659 | 392278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01659 | 351 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 308 | IPR011009 | - | |
Cmo11g01659 | 351 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 105 | - | - | |
Cmo11g01659 | 351 | CDD | STKc_MAP3K-like | 32 | 286 | - | - | |
Cmo11g01659 | 351 | ProSitePatterns | Protein kinases ATP-binding region signature. | 32 | 57 | IPR017441 | GO:0005524 | |
Cmo11g01659 | 351 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 1 | 328 | - | - | |
Cmo11g01659 | 351 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 146 | 158 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g01659 | 351 | PANTHER | PROTEIN KINASE ATN1 | 1 | 328 | - | - | |
Cmo11g01659 | 351 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 298 | - | - | |
Cmo11g01659 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 102 | 115 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01659 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 140 | 158 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01659 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 214 | 236 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01659 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 279 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01659 | 351 | ProSiteProfiles | Protein kinase domain profile. | 26 | 290 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01659 | 351 | SMART | serkin_6 | 26 | 290 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01659 | 351 | Pfam | Protein tyrosine and serine/threonine kinase | 29 | 286 | IPR001245 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02810 | Cmo11g01659 | CCT | |
Cmo04g02810 | Cmo11g01659 | ECH | |
Cmo11g01659 | Cmo14g00693 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00186 | Cmo-Chr6:1006451 | Cmo11g01659 | Cmo-Chr11:11780192 | 9.29E-65 | dispersed | |
Cmo11g01659 | Cmo-Chr11:11780192 | Cmo14g00014 | Cmo-Chr14:77131 | 2.72E-145 | dispersed | |
Cmo10g00095 | Cmo-Chr10:410087 | Cmo11g01659 | Cmo-Chr11:11780192 | 0 | wgd | |
Cmo11g01659 | Cmo-Chr11:11780192 | Cmo14g00693 | Cmo-Chr14:3568346 | 0 | wgd | |
Cmo11g01659 | Cmo-Chr11:11780192 | Cmo04g02810 | Cmo-Chr4:20168778 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74687 | PF07714 | PK_Tyr_Ser-Thr | 4.00E-56 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01659 | - | - | csv:101219563 | 662.144 |