Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01662 ATGGAGTCACTCGTTGATGGTATGAGTTCTTTACTTAAAACTCAGAACCCGACATCTACAGTGAGGATTCTCGATTCGTCGTGCCACCTTTCTGCTAAACAATCAAGGGATGAAGCCAGTTCTTCGACATCCTACGTTACATCTCAGAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTATTAAAAAACAACCCGATTCGCAGCTTGAAGGTTCAACGGATGTGAAAAAACATACACATGTTTCCAATAAGGGGAAATCTGAGCTTGTAAACCCGACGGATGTTTCGTATAAATCAACTGAAACTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGGAGCAAAACCTCTTGTGAAGCATGGTATTGAAGATTCTAAGGATTGTTGTTCAAGTGGTTTGGAACAATCTGGAAATCGAGTATTAAACGCATCGAAAGGAGATTCCACAAAAACAAATGATCAACAAAAGTCTCAGCCAGATGAAATTTCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACGTTATATGCCGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGCAGTATTAAAAAGTCTTGTGAAAGCATTGACATCACAAGTTCCTACGATCTCGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGCACCGGCAGTGATATCAGTGATGAGAGCAACTCGAGTAGTTTAAGCAATGTCATGTATAAGCCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGGTCTCATGATGGGATGTTAGGACTGAATCATTTCAGGTTGCTGCGGAGACTGGGATGTGGCGATATCGGTAGTGTCTATCTTTCGGAGTTAACCGGTACCAAAACTTATTTTGCAATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCTTTCCTTCCTACTTTGTATACACACTTCGAGACAGAGAAGTTCTCTTGCTTGGTAATGGAGTTTTGCCCAGGAGGCGACTTGCACGCGCTTAGGCAGAGGCAACCCGGAAAATTCTTCCCGGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTTCTTGCATTGGAGTATCTGCACATGCTTGGGATAATCTATAGGGACCTAAAACCTGAAAATGTGTTGGTTAGAGATGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCGGTTTCCCCGACCCTTGTTAAGTCATCAAACACGGGTTTAGAATCTAAAAGCTTGGGCTACTGTGCTCAGCCTGCTTGCATTGAGCCGACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACGCCTCGCTTCTTAAGCAGGCACAGGAAAGAAAAAAAGTCGAAACCAAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCAGAGCTCATTGCTGAGCCCACAAGTGCGAGATCGATGTCCTTTGTCGGTACACATGAGTACCTCGCACCTGAAATCATAAAAGGTGAGGGTCATGGCAGTGCTGTGGATTGGTGGACTTTCGGGATCTTTCTCTACGAGCTTTTGTTCGGTAGAACGCCATTCAAGGGAGCTGGGAACCGAGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCAGAGGCTTGCTCGTAAAAGAACCACAGCACCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAACAACATCCGTTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCAGAAGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCAGCAGGCGAAAAAACGTCGGGAGTCGATGTGAAGCCTTCAGACGAGAAGTATGGCTTCCGTCGGCCGGAGATGTATGGGAGAAGCCTTTCCGGAACCGTTGGTGCTTACGAGCGCCACGTGTTCCTCTGCTATCGAAGTCATGAGGTTTGGCCGTCCCGTGTTGATGGCTCGGACGCTGATCTGCTACCTAAACTCCTTTCCTCGGCCATAAAAACTCGTGAAAACGAAATTTCTGTTAAGACGAAGCTGACGATATGCGAGGCAGGGGAGGGAACTGAGCATTCAGATGGAGATGTATTGGTTTTTCCGGAAATGATCAAATACAGGGGTCTGAAAGACGAAGATGTGGAGAGCTTTGTTGAGAAGGTGCTTATGGATGGTAAACAGCAGGTTTATGGGGCACATGATGCTTTGGCTGGCTCTTATATTTTTGTATGTGCACATCGTAGTCGAGATAAGAGATGTGGGGTATGTGGAACAGCTCTCATTACAAAACTTATAGAGGAGATTGAACTAAGAGGACTAAAGGATCAGATTTGTGTACATGCGTGTTCACATATTGGTGGACACAAGTATGCTGGAAACGTGATTGTTTTTAGTCCAGATCTAGATGGGAGAATCATGGGCCATTGGGGTCGAATGGGGAGAATCAATGATGAGGAAGGTAAAGAAGTAGATGAAGACAAACTTCCTAGTGCTGAAGTCTCCAAGGAAACTAAGAACAAACCTTGGGAGAAGGACATCCAGGGCAACGATTAG 2697 45.35 MESLVDGMSSLLKTQNPTSTVRILDSSCHLSAKQSRDEASSSTSYVTSQNCAKKPVRHPNGSSVSIKKQPDSQLEGSTDVKKHTHVSNKGKSELVNPTDVSYKSTETSFQKKVPLEGGGAKPLVKHGIEDSKDCCSSGLEQSGNRVLNASKGDSTKTNDQQKSQPDEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIKKSCESIDITSSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNVMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNTGLESKSLGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPAGEKTSGVDVKPSDEKYGFRRPEMYGRSLSGTVGAYERHVFLCYRSHEVWPSRVDGSDADLLPKLLSSAIKTRENEISVKTKLTICEAGEGTEHSDGDVLVFPEMIKYRGLKDEDVESFVEKVLMDGKQQVYGAHDALAGSYIFVCAHRSRDKRCGVCGTALITKLIEEIELRGLKDQICVHACSHIGGHKYAGNVIVFSPDLDGRIMGHWGRMGRINDEEGKEVDEDKLPSAEVSKETKNKPWEKDIQGND 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11792207 11799224 - CmoCh11G016620.1 Cmo11g01662 392281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01662 898 SMART serkin_6 276 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01662 898 Gene3D Transferase(Phosphotransferase) domain 1 507 630 - -
Cmo11g01662 898 CDD TRX_Fd_Sucrase 786 856 IPR009737 -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 222 245 - -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 135 174 - -
Cmo11g01662 898 PANTHER FLIPPASE KINASE 1-RELATED 11 662 - -
Cmo11g01662 898 ProSiteProfiles Protein kinase domain profile. 276 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01662 898 Gene3D Transferase(Phosphotransferase) domain 1 360 428 - -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 864 898 - -
Cmo11g01662 898 CDD STKc_phototropin_like 275 635 - -
Cmo11g01662 898 Gene3D Phosphorylase Kinase; domain 1 274 359 - -
Cmo11g01662 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Cmo11g01662 898 MobiDBLite consensus disorder prediction 74 89 - -
Cmo11g01662 898 Gene3D Glutaredoxin 682 778 - -
Cmo11g01662 898 Gene3D Glutaredoxin 786 885 - -
Cmo11g01662 898 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 11 662 - -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 34 73 - -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 34 174 - -
Cmo11g01662 898 SUPERFAMILY Thioredoxin-like 788 848 IPR036249 -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 90 111 - -
Cmo11g01662 898 SUPERFAMILY Protein kinase-like (PK-like) 250 633 IPR011009 -
Cmo11g01662 898 Pfam Sucrase/ferredoxin-like 675 859 IPR009737 -
Cmo11g01662 898 MobiDBLite consensus disorder prediction 224 245 - -
Cmo11g01662 898 Pfam Protein kinase domain 509 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01662 898 Pfam Protein kinase domain 277 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01662 Cmo15g00369 CCT
Cmo04g02813 Cmo11g01662 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01662 Cmo-Chr11:11792207 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo20g00200 Cmo-Chr20:979509 Cmo11g01662 Cmo-Chr11:11792207 1.89E-177 dispersed
Cmo20g00685 Cmo-Chr20:3370425 Cmo11g01662 Cmo-Chr11:11792207 2.95E-112 dispersed
Cmo11g01662 Cmo-Chr11:11792207 Cmo14g00690 Cmo-Chr14:3558241 0 wgd
Cmo11g01662 Cmo-Chr11:11792207 Cmo15g00369 Cmo-Chr15:1718277 1.69E-81 wgd
Cmo11g01662 Cmo-Chr11:11792207 Cmo04g02813 Cmo-Chr4:20178974 7.28E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74688 PF06999 Suc_Fer-like 1.90E-30 No_clan Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01662 K08286 - csv:101219962 1182.55