Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01662 | ATGGAGTCACTCGTTGATGGTATGAGTTCTTTACTTAAAACTCAGAACCCGACATCTACAGTGAGGATTCTCGATTCGTCGTGCCACCTTTCTGCTAAACAATCAAGGGATGAAGCCAGTTCTTCGACATCCTACGTTACATCTCAGAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTATTAAAAAACAACCCGATTCGCAGCTTGAAGGTTCAACGGATGTGAAAAAACATACACATGTTTCCAATAAGGGGAAATCTGAGCTTGTAAACCCGACGGATGTTTCGTATAAATCAACTGAAACTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGGAGCAAAACCTCTTGTGAAGCATGGTATTGAAGATTCTAAGGATTGTTGTTCAAGTGGTTTGGAACAATCTGGAAATCGAGTATTAAACGCATCGAAAGGAGATTCCACAAAAACAAATGATCAACAAAAGTCTCAGCCAGATGAAATTTCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACGTTATATGCCGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGCAGTATTAAAAAGTCTTGTGAAAGCATTGACATCACAAGTTCCTACGATCTCGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGCACCGGCAGTGATATCAGTGATGAGAGCAACTCGAGTAGTTTAAGCAATGTCATGTATAAGCCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGGTCTCATGATGGGATGTTAGGACTGAATCATTTCAGGTTGCTGCGGAGACTGGGATGTGGCGATATCGGTAGTGTCTATCTTTCGGAGTTAACCGGTACCAAAACTTATTTTGCAATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCTTTCCTTCCTACTTTGTATACACACTTCGAGACAGAGAAGTTCTCTTGCTTGGTAATGGAGTTTTGCCCAGGAGGCGACTTGCACGCGCTTAGGCAGAGGCAACCCGGAAAATTCTTCCCGGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTTCTTGCATTGGAGTATCTGCACATGCTTGGGATAATCTATAGGGACCTAAAACCTGAAAATGTGTTGGTTAGAGATGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCGGTTTCCCCGACCCTTGTTAAGTCATCAAACACGGGTTTAGAATCTAAAAGCTTGGGCTACTGTGCTCAGCCTGCTTGCATTGAGCCGACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACGCCTCGCTTCTTAAGCAGGCACAGGAAAGAAAAAAAGTCGAAACCAAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCAGAGCTCATTGCTGAGCCCACAAGTGCGAGATCGATGTCCTTTGTCGGTACACATGAGTACCTCGCACCTGAAATCATAAAAGGTGAGGGTCATGGCAGTGCTGTGGATTGGTGGACTTTCGGGATCTTTCTCTACGAGCTTTTGTTCGGTAGAACGCCATTCAAGGGAGCTGGGAACCGAGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCAGAGGCTTGCTCGTAAAAGAACCACAGCACCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAACAACATCCGTTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCAGAAGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCAGCAGGCGAAAAAACGTCGGGAGTCGATGTGAAGCCTTCAGACGAGAAGTATGGCTTCCGTCGGCCGGAGATGTATGGGAGAAGCCTTTCCGGAACCGTTGGTGCTTACGAGCGCCACGTGTTCCTCTGCTATCGAAGTCATGAGGTTTGGCCGTCCCGTGTTGATGGCTCGGACGCTGATCTGCTACCTAAACTCCTTTCCTCGGCCATAAAAACTCGTGAAAACGAAATTTCTGTTAAGACGAAGCTGACGATATGCGAGGCAGGGGAGGGAACTGAGCATTCAGATGGAGATGTATTGGTTTTTCCGGAAATGATCAAATACAGGGGTCTGAAAGACGAAGATGTGGAGAGCTTTGTTGAGAAGGTGCTTATGGATGGTAAACAGCAGGTTTATGGGGCACATGATGCTTTGGCTGGCTCTTATATTTTTGTATGTGCACATCGTAGTCGAGATAAGAGATGTGGGGTATGTGGAACAGCTCTCATTACAAAACTTATAGAGGAGATTGAACTAAGAGGACTAAAGGATCAGATTTGTGTACATGCGTGTTCACATATTGGTGGACACAAGTATGCTGGAAACGTGATTGTTTTTAGTCCAGATCTAGATGGGAGAATCATGGGCCATTGGGGTCGAATGGGGAGAATCAATGATGAGGAAGGTAAAGAAGTAGATGAAGACAAACTTCCTAGTGCTGAAGTCTCCAAGGAAACTAAGAACAAACCTTGGGAGAAGGACATCCAGGGCAACGATTAG | 2697 | 45.35 | MESLVDGMSSLLKTQNPTSTVRILDSSCHLSAKQSRDEASSSTSYVTSQNCAKKPVRHPNGSSVSIKKQPDSQLEGSTDVKKHTHVSNKGKSELVNPTDVSYKSTETSFQKKVPLEGGGAKPLVKHGIEDSKDCCSSGLEQSGNRVLNASKGDSTKTNDQQKSQPDEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIKKSCESIDITSSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNVMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNTGLESKSLGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPAGEKTSGVDVKPSDEKYGFRRPEMYGRSLSGTVGAYERHVFLCYRSHEVWPSRVDGSDADLLPKLLSSAIKTRENEISVKTKLTICEAGEGTEHSDGDVLVFPEMIKYRGLKDEDVESFVEKVLMDGKQQVYGAHDALAGSYIFVCAHRSRDKRCGVCGTALITKLIEEIELRGLKDQICVHACSHIGGHKYAGNVIVFSPDLDGRIMGHWGRMGRINDEEGKEVDEDKLPSAEVSKETKNKPWEKDIQGND | 898 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11792207 | 11799224 | - | CmoCh11G016620.1 | Cmo11g01662 | 392281 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01662 | 898 | SMART | serkin_6 | 276 | 612 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01662 | 898 | Gene3D | Transferase(Phosphotransferase) domain 1 | 507 | 630 | - | - | |
Cmo11g01662 | 898 | CDD | TRX_Fd_Sucrase | 786 | 856 | IPR009737 | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 222 | 245 | - | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 135 | 174 | - | - | |
Cmo11g01662 | 898 | PANTHER | FLIPPASE KINASE 1-RELATED | 11 | 662 | - | - | |
Cmo11g01662 | 898 | ProSiteProfiles | Protein kinase domain profile. | 276 | 612 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01662 | 898 | Gene3D | Transferase(Phosphotransferase) domain 1 | 360 | 428 | - | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 864 | 898 | - | - | |
Cmo11g01662 | 898 | CDD | STKc_phototropin_like | 275 | 635 | - | - | |
Cmo11g01662 | 898 | Gene3D | Phosphorylase Kinase; domain 1 | 274 | 359 | - | - | |
Cmo11g01662 | 898 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 397 | 409 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 74 | 89 | - | - | |
Cmo11g01662 | 898 | Gene3D | Glutaredoxin | 682 | 778 | - | - | |
Cmo11g01662 | 898 | Gene3D | Glutaredoxin | 786 | 885 | - | - | |
Cmo11g01662 | 898 | PANTHER | SERINE/THREONINE-PROTEIN KINASE D6PKL3 | 11 | 662 | - | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 34 | 73 | - | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 34 | 174 | - | - | |
Cmo11g01662 | 898 | SUPERFAMILY | Thioredoxin-like | 788 | 848 | IPR036249 | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 90 | 111 | - | - | |
Cmo11g01662 | 898 | SUPERFAMILY | Protein kinase-like (PK-like) | 250 | 633 | IPR011009 | - | |
Cmo11g01662 | 898 | Pfam | Sucrase/ferredoxin-like | 675 | 859 | IPR009737 | - | |
Cmo11g01662 | 898 | MobiDBLite | consensus disorder prediction | 224 | 245 | - | - | |
Cmo11g01662 | 898 | Pfam | Protein kinase domain | 509 | 612 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01662 | 898 | Pfam | Protein kinase domain | 277 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01662 | Cmo15g00369 | CCT | |
Cmo04g02813 | Cmo11g01662 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01662 | Cmo-Chr11:11792207 | Cmo18g00610 | Cmo-Chr18:7402842 | 0 | dispersed | |
Cmo20g00200 | Cmo-Chr20:979509 | Cmo11g01662 | Cmo-Chr11:11792207 | 1.89E-177 | dispersed | |
Cmo20g00685 | Cmo-Chr20:3370425 | Cmo11g01662 | Cmo-Chr11:11792207 | 2.95E-112 | dispersed | |
Cmo11g01662 | Cmo-Chr11:11792207 | Cmo14g00690 | Cmo-Chr14:3558241 | 0 | wgd | |
Cmo11g01662 | Cmo-Chr11:11792207 | Cmo15g00369 | Cmo-Chr15:1718277 | 1.69E-81 | wgd | |
Cmo11g01662 | Cmo-Chr11:11792207 | Cmo04g02813 | Cmo-Chr4:20178974 | 7.28E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74688 | PF06999 | Suc_Fer-like | 1.90E-30 | No_clan | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01662 | K08286 | - | csv:101219962 | 1182.55 |