Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01668 | ATGTCTTCTTCCACCTACTCCAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGTCTCCCGAACTGCGTTTTCGCGCCGTATTTCCCGTCGGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATCTTCGGAGCTAGCAATGTCAGCAAACTACTAAACGAGGTCCAGCCACACCAACGAGAGGACGCCGTGAACTCGCTCGCTTACGAGGCCGAGGCAAGGATGAAAGACCCCGTCTACGGCTGCGTCGGCGCCATCTCGATCCTCCAAAGACAAGTCATCAAGCTTCAAAGAGAACTCGACGCTACCAACGCTAACCTCATTCGCTACGCCTGCAGTGAACTCCCTGCCCCATCATCGTCGTCGTCATCGCAGTATGCTCGGAGATCGTCGTCAACAAGTCACATCGGAAGCTCATCGACCTCTAGCTATGGCCATTACTATTCTGGCCTCTACTTTTGTGGCCCTTGTGGAGATGACCATGACAAAGGAGAAGAACACAAGTAA | 516 | 52.52 | MSSSTYSNSPCAACKFLRRKCLPNCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELDATNANLIRYACSELPAPSSSSSSQYARRSSSTSHIGSSSTSSYGHYYSGLYFCGPCGDDHDKGEEHK | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11836728 | 11837243 | + | CmoCh11G016680.1 | Cmo11g01668 | 392287 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01668 | 171 | Coils | Coil | 89 | 109 | - | - | |
Cmo11g01668 | 171 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
Cmo11g01668 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 138 | - | - | |
Cmo11g01668 | 171 | MobiDBLite | consensus disorder prediction | 119 | 144 | - | - | |
Cmo11g01668 | 171 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Cmo11g01668 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 1 | 138 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02817 | Cmo11g01668 | CCT | |
Cmo04g02817 | Cmo11g01668 | ECH | |
Cmo11g01668 | Cmo14g00684 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01668 | Cmo-Chr11:11836728 | Cmo13g00898 | Cmo-Chr13:8029265 | 1.25E-60 | dispersed | |
Cmo20g01156 | Cmo-Chr20:11332397 | Cmo11g01668 | Cmo-Chr11:11836728 | 1.53E-48 | dispersed | |
Cmo15g00156 | Cmo-Chr15:724698 | Cmo11g01668 | Cmo-Chr11:11836728 | 1.87E-48 | transposed | |
Cmo10g00109 | Cmo-Chr10:468151 | Cmo11g01668 | Cmo-Chr11:11836728 | 2.10E-68 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo11g01668 | Cmo-Chr11:11836728 | 3.51E-68 | wgd | |
Cmo11g01668 | Cmo-Chr11:11836728 | Cmo14g00684 | Cmo-Chr14:3497304 | 3.31E-96 | wgd | |
Cmo11g01668 | Cmo-Chr11:11836728 | Cmo04g02817 | Cmo-Chr4:20199087 | 8.71E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10642 | PF03195 | LOB | 2.40E-42 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01668 | - | - | cpep:111792844 | 313.153 |