Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01668 ATGTCTTCTTCCACCTACTCCAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGTCTCCCGAACTGCGTTTTCGCGCCGTATTTCCCGTCGGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATCTTCGGAGCTAGCAATGTCAGCAAACTACTAAACGAGGTCCAGCCACACCAACGAGAGGACGCCGTGAACTCGCTCGCTTACGAGGCCGAGGCAAGGATGAAAGACCCCGTCTACGGCTGCGTCGGCGCCATCTCGATCCTCCAAAGACAAGTCATCAAGCTTCAAAGAGAACTCGACGCTACCAACGCTAACCTCATTCGCTACGCCTGCAGTGAACTCCCTGCCCCATCATCGTCGTCGTCATCGCAGTATGCTCGGAGATCGTCGTCAACAAGTCACATCGGAAGCTCATCGACCTCTAGCTATGGCCATTACTATTCTGGCCTCTACTTTTGTGGCCCTTGTGGAGATGACCATGACAAAGGAGAAGAACACAAGTAA 516 52.52 MSSSTYSNSPCAACKFLRRKCLPNCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELDATNANLIRYACSELPAPSSSSSSQYARRSSSTSHIGSSSTSSYGHYYSGLYFCGPCGDDHDKGEEHK 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11836728 11837243 + CmoCh11G016680.1 Cmo11g01668 392287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01668 171 Coils Coil 89 109 - -
Cmo11g01668 171 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cmo11g01668 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 138 - -
Cmo11g01668 171 MobiDBLite consensus disorder prediction 119 144 - -
Cmo11g01668 171 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cmo11g01668 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 138 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02817 Cmo11g01668 CCT
Cmo04g02817 Cmo11g01668 ECH
Cmo11g01668 Cmo14g00684 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01668 Cmo-Chr11:11836728 Cmo13g00898 Cmo-Chr13:8029265 1.25E-60 dispersed
Cmo20g01156 Cmo-Chr20:11332397 Cmo11g01668 Cmo-Chr11:11836728 1.53E-48 dispersed
Cmo15g00156 Cmo-Chr15:724698 Cmo11g01668 Cmo-Chr11:11836728 1.87E-48 transposed
Cmo10g00109 Cmo-Chr10:468151 Cmo11g01668 Cmo-Chr11:11836728 2.10E-68 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo11g01668 Cmo-Chr11:11836728 3.51E-68 wgd
Cmo11g01668 Cmo-Chr11:11836728 Cmo14g00684 Cmo-Chr14:3497304 3.31E-96 wgd
Cmo11g01668 Cmo-Chr11:11836728 Cmo04g02817 Cmo-Chr4:20199087 8.71E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10642 PF03195 LOB 2.40E-42 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01668 - - cpep:111792844 313.153