Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01690 ATGGCGGTTCTGCCTCTGCAGCTTTCTTGTGTGAGGACTATTGACAGTTCGTCTTCGCCATTGTTGAGAGGAGGTAAATCGTCGTTGTTTTGGGGAAGACATTTGCGCTTTGGAATTGGAGGTATTAGGGATGGTCCGGGAGTGAAAGCTCGATTCAATGGTCGAGGTTTTGAGGTTTTCGCCATGTCGGATGGCTCATCTTCTTCGTATAAGATGAATCTCAATGAGTACTTGGTTACTCTCCAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCGAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCGAGCGATTCTTCTGGCGTCAAGCTCGTTGAGATCAAAGACTTTGGAGATACACAGATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCGATTCAACATCTTCTGCTTTCAAATGATTTAGATATTTTATTTAATCGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAGTCTTGGCATCAAATTTACAAACACCTGATGCAAACAGTGGGAATTCTGGCTTTGCAACTTTCTCCTCTAAGTTCTCAACATCATTAGGTTGGAAACTTCTAAATAATCAAAATGGAGATGTTAAATCACCCATGCAGAGAAACACTCTCACACCTCAGATCAGCCAGGTTGTTTGTATATTTACCGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTTCCCATAGACGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAAGCAGATGTTGAGGCTTTGTCAAATAACGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACCGAGGCAGAAAACTGGGGGATTAGCTCCAAGTTAATCAATGAGTCGTGCCAAAAATATGATATTCTCATGATCAACTATCCTATTAGGGAAGGAGATTCTTATGATATGAGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTGTAACTTGTACCACCGGTTTTGATCGAGCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACGGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCAGCAATTGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCACGATGGACCTCCCACTCACGCCGTTACTTTCGTATGGAATGGTCAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAAGGGAAGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCATTCAACAGCTTCGCCTGCTGAAAGGGATGATAGGGGGAATGTCAACAATGTTATAGTCATTGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAGAAAGATGCAAATATTGTAAAGGTAATTGAAAGACCACTTACAGAAAATGAGAGGTTTATGTTGGCGAAAGCGGCTCGATGCGTTGCATTTTCGGTATGTCCAATTAGACTAACTCCAAAGTAA 1776 43.19 MAVLPLQLSCVRTIDSSSSPLLRGGKSSLFWGRHLRFGIGGIRDGPGVKARFNGRGFEVFAMSDGSSSSYKMNLNEYLVTLQKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLVEIKDFGDTQMMLKEKAGSFSLVLERPFTPFPIQHLLLSNDLDILFNRGRVPIATWKKEVLASNLQTPDANSGNSGFATFSSKFSTSLGWKLLNNQNGDVKSPMQRNTLTPQISQVVCIFTEEDPGEGEWAHGSFPIDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCLQTEADVEALSNNVGITAVLNFQSATEAENWGISSKLINESCQKYDILMINYPIREGDSYDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRAPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVEHGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11970172 11976420 + CmoCh11G016900.1 Cmo11g01690 392309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01690 591 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515
Cmo11g01690 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 55 590 IPR030066 GO:0005983
Cmo11g01690 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Cmo11g01690 591 Pfam Dual specificity phosphatase, catalytic domain 306 423 IPR000340 GO:0008138|GO:0016311
Cmo11g01690 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 55 590 - -
Cmo11g01690 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 429 IPR029021 -
Cmo11g01690 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Cmo11g01690 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Cmo11g01690 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203|GO:0046838
Cmo11g01690 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Cmo11g01690 591 SUPERFAMILY PDZ domain-like 63 164 IPR036034 GO:0005515
Cmo11g01690 591 Gene3D Protein tyrosine phosphatase superfamily 284 550 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01198 Cmo-Chr2:7171087 Cmo11g01690 Cmo-Chr11:11970172 6.10E-06 dispersed
Cmo04g01478 Cmo-Chr4:7568104 Cmo11g01690 Cmo-Chr11:11970172 3.87E-28 dispersed
Cmo11g01690 Cmo-Chr11:11970172 Cmo07g00353 Cmo-Chr7:1632030 9.77E-06 dispersed
Cmo11g01690 Cmo-Chr11:11970172 Cmo18g00927 Cmo-Chr18:10439013 1.87E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01690 - - cmos:111435043 1202.96