Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01698 ATGATGAGCATGAGCATGAACATGAGCATGCAAGAGAGTCCAAAGGGGAGACCATTTTTCAGATCCCCTGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCCGAGAAGAAGCGCCGCTTGGCCAACGAGCAGGTTTTTTACGTTCACCTTTATTACTTGTTGCTATGTCTCACTCTTTGTGGACTAAAATTGAAGTTGTGGAAAACTGTTGTGAAGGTTCAAATGCTGGAGAAGAGTTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGCCGTGCCCGGTGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTATGTCAAACTATGACTCCATTGTCAAAGAGAATGCAGTGCTTAAATCTGAGGTGGCTTCCTTGACTGAGAAATGTGTAGCTAAAGAGCTTGATGGAGGAGAAGCACCAATTCCACGTACGACTTTGGAGCCTCTTCTAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGTGGCTCCGGGAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCTACAACTCATCGACAGCGGCGATTCTTACTTCCCGAGTAACGAGTATCCACAACGTGCACCTCTACCTCCTGGGCTGCAAATGGAACATGATGACAGGAATGATAATAGCAATTACTTGTTCTCAGATATGTTCGCAGAAACAAACCAACAGAACCAGGAGGGAGGGCCTCCAGCTTGGTGGGCGTGGCCTTAG 855 48.3 MMSMSMNMSMQESPKGRPFFRSPDDLYDDEYYDELYPEKKRRLANEQVFYVHLYYLLLCLTLCGLKLKLWKTVVKVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCVAKELDGGEAPIPRTTLEPLLADTAHVSAPHSGGSGRKAEDRLSSGSDSSAVIDDNCLQLIDSGDSYFPSNEYPQRAPLPPGLQMEHDDRNDNSNYLFSDMFAETNQQNQEGGPPAWWAWP 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12022787 12024004 + CmoCh11G016980.1 Cmo11g01698 392317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01698 284 MobiDBLite consensus disorder prediction 230 259 - -
Cmo11g01698 284 Pfam Homeobox associated leucine zipper 122 162 IPR003106 GO:0006355|GO:0043565
Cmo11g01698 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 74 252 - -
Cmo11g01698 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 4 48 - -
Cmo11g01698 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 48 IPR045224 GO:0003700
Cmo11g01698 284 SUPERFAMILY Homeodomain-like 67 132 IPR009057 -
Cmo11g01698 284 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Cmo11g01698 284 SMART HOX_1 64 126 IPR001356 GO:0003677
Cmo11g01698 284 ProSiteProfiles 'Homeobox' domain profile. 75 122 IPR001356 GO:0003677
Cmo11g01698 284 CDD homeodomain 76 123 IPR001356 GO:0003677
Cmo11g01698 284 MobiDBLite consensus disorder prediction 189 213 - -
Cmo11g01698 284 Pfam Homeodomain 75 120 IPR001356 GO:0003677
Cmo11g01698 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 252 IPR045224 GO:0003700
Cmo11g01698 284 Gene3D - 74 120 - -
Cmo11g01698 284 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Cmo11g01698 284 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01698 Cmo15g00340 CCT
Cmo04g02845 Cmo11g01698 CCT
Cmo11g01698 Cmo14g00654 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01698 Cmo-Chr11:12022787 Cmo04g00899 Cmo-Chr4:4526610 3.00E-33 dispersed
Cmo11g01698 Cmo-Chr11:12022787 Cmo14g00654 Cmo-Chr14:3312300 3.19E-145 wgd
Cmo11g01698 Cmo-Chr11:12022787 Cmo15g00340 Cmo-Chr15:1583354 3.42E-17 wgd
Cmo11g01698 Cmo-Chr11:12022787 Cmo04g02845 Cmo-Chr4:20319544 6.12E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10644 PF00046 Homeodomain 1.40E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01698 K09338 - csv:101212142 392.504