Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01716 ATGTGGCTGCAGAAAGGAAACAGCGTGAATGGCACGAAAAAGGGAGGAATAGCCGGAAGAGGAAATGGATTGGTGGCGATCGGCGTTGATAGGGAAAAAGGAAGCCAAAATGCTCTCCGATGGGCCACCGAGCATCTGCTCGTCAAGGGTCAAACCGTGATATTAATCCATGTAGTTCAGAGACCTTCCAGTGCGGCTGCTTATTTGATTGGGGGAGCCATTATTTGTAATAGCGATGGCAGTTTCGCCAGTAATTCCCCTCGTAAACAGCAGCTCGAGATGCAGACTCGTGACATTTTTCTCACCTTCCATTGCTATTGTACTCGTAAGGATATTCAATGCCTTGATGTCATATTGGAAGATACTGATGTGGTGAAAGCGTTAACTGAATACGTCTCGTATAGTGCGATCGAAAACTTGGTGCTTGGGGCTCCATCGAAACATGGATTTATCAGGTTTAAGTCGTCGAGCATGGGGAGTAGTGTGTCGAAAGGGGCACCGGATTTCTGCACTGTATATGTCATCTCAAAGGGAAAGGTGTCGTCGGTGAGACATGCCACTCGCTTGGCTCCCGCTGCTTCTCCTCTACTAGACCATTTGCAGAAGTTATCGAAGCCGATCGTAAAGGGAACGGGCACTCCTCAACATAAGTTTAATTTAAGAGACAGGACATCATTCAAGCCTCGGAATTTTCAAGATGAATCAATCAAGCCAGAAATATCTCAGGGAGTGGATAGAACTTCTATTTCCAAATATAGTGGAGGGTTCTCCGAGTCAGAATCCGACATATCCTTCATAAGCTCAGGAAGACCAAGCACGGATCGTACTTCTTCTGTTGCACTTGACTATGAATCCGCCCCACTGCAATATTCAAACAGCTCAGACCAAAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCACAATCAACTCAATGATTTCTCATCACTTTCAGATGAGAGCTGCAGGACATCATTTTCCTATTCTTCTCAGAACTTGGATGAAGCAGAGCTTGAAATGAAGAGGTTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCTTGTAAAGAAGCACTAACAGCAAAGCAGAAGGCAAGGGAACTAAATAACTGGAGATGTGAAGAAGAACAGAAACTAGAAGAGGCGCGGCTTGCACAAGAAGCAGCAATGGCTATTGCAGAGCAGGAGAGAGCGAGATGCCGAGCGGCGATGGAAGCAGCTGATGCAGCTAAGAAAATAGCTGAGTTAGAATCATATAAAAGAGAAAATCTAGAGATAGAAGCACTTAAAGAAGCAGAGGAAATGCAAAGAGCATTGAAAAATCTTGCACAAAGTGACATCAGATACAGGAGATATACAATTGAGGAGATTGAATCAGCAACAGAAAATTTTGCACAGTCTCGGAAGATAGGGGAAGGAGGTTATGGACCTGTTTTTCATTGTCGTCTTGATCACACATCGGTTGCGGTCAAGGTTTTGCGCCCCGATGCGACTCAAGGAAGGGAACAATTTCAGCGAGAGGTGAGGAACTTAGAACAACTTTGGGATCATTTTATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTTGGAGCATGCCCAGAATATGGCATTCTAGTGTACGAGCACATGTCGAACGGAAGTTTGGAGGATCGACTCTTCCGAAAGGGGAACACCCCTGCTATTCCTTGGCAGTACCGGTTTCGAATTGCTGCTGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACCAAACCAGAGCCATTAGTGCACCGTGATCTCAAGCCAGCTAACATATTGCTAGACTACAATTATGTTAGCAAAATAAGCGACGTTGGTTTGGCTAGACTTGTACCCGCCGTGGCCGAAAATGTAACACAATGCTACATGACTTCAGCCGCTGGAACTTTCTGCTATATAGACCCTGAATATCAACAGACTGGAATGCTTGGGGTTAAATCTGATGTCTACTCATTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCGCCCATGGGGTTGGCTCACCAAATTGCTCGAGCTATTGAGAAGGGGACTTTGGCGGATTTTCTGGACCCAGCTGTGGATGATTGGCCGGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGACGAAAAGACAGGCCAGATCTTGCCAATGTTTTGTTGCCAGAACTTAACAGATTGAGAGAGTTTGGTGAGGAGAGAATGGAGCACCTGTTGTCAATGGATAGATGTAATGAGCGATCCACAACTACTGATGATTTCAGGAAGTTCGAAGAGCCAATCTAG 2340 44.96 MWLQKGNSVNGTKKGGIAGRGNGLVAIGVDREKGSQNALRWATEHLLVKGQTVILIHVVQRPSSAAAYLIGGAIICNSDGSFASNSPRKQQLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDVVKALTEYVSYSAIENLVLGAPSKHGFIRFKSSSMGSSVSKGAPDFCTVYVISKGKVSSVRHATRLAPAASPLLDHLQKLSKPIVKGTGTPQHKFNLRDRTSFKPRNFQDESIKPEISQGVDRTSISKYSGGFSESESDISFISSGRPSTDRTSSVALDYESAPLQYSNSSDQSFASLPFKPKWTDHNQLNDFSSLSDESCRTSFSYSSQNLDEAELEMKRLKLELKQTMEMYSTACKEALTAKQKARELNNWRCEEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKKIAELESYKRENLEIEALKEAEEMQRALKNLAQSDIRYRRYTIEEIESATENFAQSRKIGEGGYGPVFHCRLDHTSVAVKVLRPDATQGREQFQREVRNLEQLWDHFIDILSCIRHPNMVLLLGACPEYGILVYEHMSNGSLEDRLFRKGNTPAIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDYNYVSKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHQIARAIEKGTLADFLDPAVDDWPVEQALCFAKLALQCAELRRKDRPDLANVLLPELNRLREFGEERMEHLLSMDRCNERSTTTDDFRKFEEPI 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12161082 12167911 - CmoCh11G017160.1 Cmo11g01716 392335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01716 779 Coils Coil 335 355 - -
Cmo11g01716 779 PANTHER BNAA05G18880D PROTEIN 20 758 - -
Cmo11g01716 779 ProSiteProfiles Protein kinase domain profile. 469 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01716 779 Gene3D Phosphorylase Kinase; domain 1 447 552 - -
Cmo11g01716 779 Gene3D HUPs 24 175 IPR014729 -
Cmo11g01716 779 PANTHER OS02G0152300 PROTEIN 20 758 - -
Cmo11g01716 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Cmo11g01716 779 CDD STK_N 24 178 - -
Cmo11g01716 779 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 175 - -
Cmo11g01716 779 Coils Coil 381 401 - -
Cmo11g01716 779 SUPERFAMILY Protein kinase-like (PK-like) 451 738 IPR011009 -
Cmo11g01716 779 Coils Coil 421 450 - -
Cmo11g01716 779 MobiDBLite consensus disorder prediction 251 278 - -
Cmo11g01716 779 SMART serkin_6 469 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01716 779 Pfam Protein kinase domain 470 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01716 779 Gene3D Transferase(Phosphotransferase) domain 1 553 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01633 Cmo-Chr1:12395026 Cmo11g01716 Cmo-Chr11:12161082 0 dispersed
Cmo05g00647 Cmo-Chr5:3265098 Cmo11g01716 Cmo-Chr11:12161082 0 dispersed
Cmo09g00527 Cmo-Chr9:2474861 Cmo11g01716 Cmo-Chr11:12161082 0 dispersed
Cmo11g01716 Cmo-Chr11:12161082 Cmo12g00230 Cmo-Chr12:1521191 0 dispersed
Cmo11g01716 Cmo-Chr11:12161082 Cmo19g00725 Cmo-Chr19:7529137 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74691 PF00069 Pkinase 1.10E-35 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01716 - - csv:101202855 1186.02