Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01723 ATGAATGGGAAATTTGCAGAGAGTTTAGGTTGTGTAGAAATGTCGATTTCTTCGTCGAATCCGACCCGGAATGGGAGTGTTAAAAACAACGATATGTTACACAATGTTAATGAGATTGAAGAAAAGAGTTTAGGTTGTCTAGAAATGTCGATTTCTTCGTCGAATCCGACCCAGAATGGGAGTGTTAAAAACAACGATACGTTACACAATATTAGTCAGATTGAAGAAAGTGCATTTTCCAAGCTATTGGATAGGCCAAGGCCATTGAACATGGAGAGACAGAGATCATTTGATGAAAGATCGCTAGCGGACTTGGCGATTGGTTTCTCCCCACGCTTATCTTCGAGACTTTCTTCGGAGAACTTTACTCGATTGATAGACAATTATGATCAAACTCCATCTCCTGGTAGAAGATCGGATTTCAATACTCCAAGATCCCAGATTGGATTCGAGCAGCATCCTATGGTGGCCGAAGCTTGGGATGCTTTGAGGCGTTCGTTGGTCCATTTTCGTGGCCAACCAGTTGGTACTATTGCTGCTTTGGACAGTACTGAAGAAAATCTTAATTATGATCAAGTGTTCGTGAGAGACTTTGTCCCAAGCGCATTTGCTTTTCTAATGAACGGGGAGCCTGAGATTGTAAAAAACTTCATTTTAAAGACGCTACGGCTTCAGTCGTGGGAGAAAAAGATCGACAGGTTCCAGCTTGGAGAAGGGGTGATGCCTGCTAGTTTCAAAGTACTTCATGATCCAGTGAGGAATTCTGAAACTTTAATTGCAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCTCCAGTTGACTCCGGATTCTGGTGGATTATATTGCTACGAGCATACACAAAGTCTACTGGTGACTCTTCCTTGGCTGAACTACCAGAATGTCAAAAGGGAATGCGCCTTATTTTGAGTCTCTGTCTTTCCGAAGGGTTCGACACGTTTCCTACCCTTCTCTGTGCTGATGGATGCTGCATGATTGATAGACGAATGGGTGTATATGGCTACCCAATTGAAATTCAAGCTCTTTTCTTTATGGCTTTAAGGTGTGCTTTGCTTTTGCTAAAGCACGACCACGAGGGGAAGGACTTTATCGAAAGAATAACAAAACGACTTCTTGCCTTGAGCTATCACATGAGAACTTACTTTTGGCTAGACCTAAAGCAACTAAACGATATATATCGATATAAAACCGAAGAATACTCTCACACTGCTTTGAACAAGTTCAACGTAATACCCGATTCTCTTCCCGAATGGATTTTCGACTTCATGCCGATTCATGGTGGTTACTTTATTGGAAATGTCAGCCCTGCAAGAATGGACTTCCGCTGGTTTTGCTTGGGCAACTGCATTGCTATTCTTTCTGCCTTGGCAACACCAGAACAGTCCACTGCTATTATGGACCTTATTGAATCACGGTGGGAAGAACTGGTCGGAGAAATGCCGCTTAAGGTTTGTTACCCTGCCATTGAAAGCCATGAGTGGCGGATTATAACCGGGTGTGATCCGAAAAATACGAGATGGAGTTACCACAATGGTGGTTCTTGGCCAGTTCTCCTATGGCTTCTAACAGCTGCATGTATCAAAACCGGGCGACCCCAGATTGCAAGACGTGCAATCGAACTAGCTGAAACCAGGCTACTGAAAGACAGCTGGCCTGAATATTACGACGGGAAGCTGGGGCGATACATCGGGAAACAGGCAAGGAAGTTTCAGACGTGGTCGATTGCAGGTTATTTAGTAGCGAAGATGATGCTGGAAGACCCGTCGCATGCAGGCATGGTGTCTCTGGAGGAAGACAAGCAGATGAAGCCATTAATGAAAAGGTCACATTCATGGACTTGTTAG 1863 43.96 MNGKFAESLGCVEMSISSSNPTRNGSVKNNDMLHNVNEIEEKSLGCLEMSISSSNPTQNGSVKNNDTLHNISQIEESAFSKLLDRPRPLNMERQRSFDERSLADLAIGFSPRLSSRLSSENFTRLIDNYDQTPSPGRRSDFNTPRSQIGFEQHPMVAEAWDALRRSLVHFRGQPVGTIAALDSTEENLNYDQVFVRDFVPSAFAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNSETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKHDHEGKDFIERITKRLLALSYHMRTYFWLDLKQLNDIYRYKTEEYSHTALNKFNVIPDSLPEWIFDFMPIHGGYFIGNVSPARMDFRWFCLGNCIAILSALATPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIELAETRLLKDSWPEYYDGKLGRYIGKQARKFQTWSIAGYLVAKMMLEDPSHAGMVSLEEDKQMKPLMKRSHSWTC 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12196584 12202711 - CmoCh11G017230.1 Cmo11g01723 392342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01723 620 Gene3D - 183 589 IPR012341 GO:0005975
Cmo11g01723 620 SUPERFAMILY Six-hairpin glycosidases 167 587 IPR008928 GO:0005975
Cmo11g01723 620 PANTHER - 50 619 IPR024746 GO:0033926
Cmo11g01723 620 Pfam Alkaline and neutral invertase 159 594 IPR024746 GO:0033926
Cmo11g01723 620 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 50 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01723 - - - cmax:111486232 1238.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01016 Cmo-Chr1:7691207 Cmo11g01723 Cmo-Chr11:12196584 0 dispersed
Cmo11g01723 Cmo-Chr11:12196584 Cmo18g00942 Cmo-Chr18:10565644 0 dispersed
Cmo11g01723 Cmo-Chr11:12196584 Cmo09g01119 Cmo-Chr9:6378377 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01723 Cmo_Chr11 FPKM 37.814598 48.419796 36.778732 37.30405 18.622261 17.595058 17.443415 168.716614 180.214996 174.55246