Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01728 ATGCCGGCAATGGCTTCTCCATGGGGCAAACCAGGCGCTTGGGCGCTAGATTCCGAGGAGCACGAAGCTGAACTCCTCAAAGAAGAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGGCGGAGCTCAGCCTGGATTTTCCGTCCCTCAACGACGCCTTGGCCACCAAGCAGAAGAAGAAAGGGCAAACTCTCTCGTTGGCGGAGTTCACCGCCCATGCCGGTAGCGGCTCGAAATATTCTTCGCAGGGCCGCACTCATGAAGATGTATTGGTACTTCCTACCGGCCCTCGCGAACGCACGGCGGAGGAGCTCGACCGGAACAAGCTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGTTCGTATGAGAGGAGTAACAGGTATTCGAATGGTGATGATTCGTCTAACTCGAAGTGGGGTTCGTCTAGGGTCTCTGATGAAAATAGGAGGAACGATGGTGGATTTAATAGGGGGGATTCGAGCAAGGAATTTGTACCTTCTAGGGCTGACGAAGTCGATAATTGGGCTTCAACTAAGAAACCAATGGCTGGAAATGGATTTGAGAGGAGGGATAGAGGATTAGGGTTTTCGGATTCGCAATCCTCAAAAGCCGACGAATCTGAGAGTTGGGTTTCTAATAAGAGCAATGTTCCATCGGATGCAAGGAGATTTGGGGCTAACGGCGGATTTGACAGAGAGCGACGAGGAGGGTTCCCAGCGAGCGGCGGCGGTGCGGATTCAGACACTTGGGGGAGGAAGAAAGATGAAGGTAATATTGGCGGCGGCGGCGGCGGCGGTGCGGATTCAGATACTTGGGGGAGGAAGAAAGATGAAGGTAATTCTGGCGGCGGCGGCGGTGGTGGTAGTCGGCCGAAGCTTAATCTTCAGCCACGTACGCTACCGGTGAATGATGTGAAGTCGTCGGAGATATCAGGGACGACGGCGAGGTCCAAGAGTTCGAATCCATTTGGAGAGGCGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGGAAAAAACTTGACGAGGAGTTAGAGTTGAAGATTAAGGAAGTGTCGATGGAGAAGACTGAAAAATCCAACGCCATTGGGAAAAAGAGCTTTGGCAATGGAACTACTCGTGCTGCTGAGGACAGAACAGAGAGGAGCTGGAGGAAGCCGGAGTCGCCCCCGGAGGAGTCACCGGAATCTCGTCCTGACAGTGTGGAGGACAACGAAAATGGCGAAGAGGACGGGAACAAGAACGAAGCTTGA 1266 53.24 MPAMASPWGKPGAWALDSEEHEAELLKEEQEQQQQQQQQKKAELSLDFPSLNDALATKQKKKGQTLSLAEFTAHAGSGSKYSSQGRTHEDVLVLPTGPRERTAEELDRNKLGGGFRNYGSNGSYERSNRYSNGDDSSNSKWGSSRVSDENRRNDGGFNRGDSSKEFVPSRADEVDNWASTKKPMAGNGFERRDRGLGFSDSQSSKADESESWVSNKSNVPSDARRFGANGGFDRERRGGFPASGGGADSDTWGRKKDEGNIGGGGGGGADSDTWGRKKDEGNSGGGGGGGSRPKLNLQPRTLPVNDVKSSEISGTTARSKSSNPFGEARPREEVLAEKGHDWKKLDEELELKIKEVSMEKTEKSNAIGKKSFGNGTTRAAEDRTERSWRKPESPPEESPESRPDSVEDNENGEEDGNKNEA 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12225354 12226742 + CmoCh11G017280.1 Cmo11g01728 392347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01728 421 MobiDBLite consensus disorder prediction 23 46 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 30 45 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 74 342 - -
Cmo11g01728 421 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 1 393 - -
Cmo11g01728 421 Pfam Plant specific eukaryotic initiation factor 4B 201 365 IPR010433 GO:0003743
Cmo11g01728 421 Pfam Plant specific eukaryotic initiation factor 4B 4 232 IPR010433 GO:0003743
Cmo11g01728 421 MobiDBLite consensus disorder prediction 379 406 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 145 177 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 120 144 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 302 323 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 325 342 - -
Cmo11g01728 421 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 393 IPR010433 GO:0003743
Cmo11g01728 421 MobiDBLite consensus disorder prediction 199 222 - -
Cmo11g01728 421 MobiDBLite consensus disorder prediction 356 421 - -
Cmo11g01728 421 Coils Coil 16 47 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00319 Cmo11g01728 CCT
Cmo11g01728 Cmo20g00764 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00319 Cmo-Chr2:1634465 Cmo11g01728 Cmo-Chr11:12225354 1.81E-124 dispersed
Cmo05g00053 Cmo-Chr5:191618 Cmo11g01728 Cmo-Chr11:12225354 1.57E-45 dispersed
Cmo11g01728 Cmo-Chr11:12225354 Cmo12g00028 Cmo-Chr12:163125 1.85E-33 dispersed
Cmo11g01728 Cmo-Chr11:12225354 Cmo20g00764 Cmo-Chr20:3837167 2.56E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01728 - - bhj:120077882 577.785