Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01728 | ATGCCGGCAATGGCTTCTCCATGGGGCAAACCAGGCGCTTGGGCGCTAGATTCCGAGGAGCACGAAGCTGAACTCCTCAAAGAAGAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGGCGGAGCTCAGCCTGGATTTTCCGTCCCTCAACGACGCCTTGGCCACCAAGCAGAAGAAGAAAGGGCAAACTCTCTCGTTGGCGGAGTTCACCGCCCATGCCGGTAGCGGCTCGAAATATTCTTCGCAGGGCCGCACTCATGAAGATGTATTGGTACTTCCTACCGGCCCTCGCGAACGCACGGCGGAGGAGCTCGACCGGAACAAGCTTGGTGGTGGATTTAGGAATTATGGCTCGAATGGTTCGTATGAGAGGAGTAACAGGTATTCGAATGGTGATGATTCGTCTAACTCGAAGTGGGGTTCGTCTAGGGTCTCTGATGAAAATAGGAGGAACGATGGTGGATTTAATAGGGGGGATTCGAGCAAGGAATTTGTACCTTCTAGGGCTGACGAAGTCGATAATTGGGCTTCAACTAAGAAACCAATGGCTGGAAATGGATTTGAGAGGAGGGATAGAGGATTAGGGTTTTCGGATTCGCAATCCTCAAAAGCCGACGAATCTGAGAGTTGGGTTTCTAATAAGAGCAATGTTCCATCGGATGCAAGGAGATTTGGGGCTAACGGCGGATTTGACAGAGAGCGACGAGGAGGGTTCCCAGCGAGCGGCGGCGGTGCGGATTCAGACACTTGGGGGAGGAAGAAAGATGAAGGTAATATTGGCGGCGGCGGCGGCGGCGGTGCGGATTCAGATACTTGGGGGAGGAAGAAAGATGAAGGTAATTCTGGCGGCGGCGGCGGTGGTGGTAGTCGGCCGAAGCTTAATCTTCAGCCACGTACGCTACCGGTGAATGATGTGAAGTCGTCGGAGATATCAGGGACGACGGCGAGGTCCAAGAGTTCGAATCCATTTGGAGAGGCGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAAGGACATGATTGGAAAAAACTTGACGAGGAGTTAGAGTTGAAGATTAAGGAAGTGTCGATGGAGAAGACTGAAAAATCCAACGCCATTGGGAAAAAGAGCTTTGGCAATGGAACTACTCGTGCTGCTGAGGACAGAACAGAGAGGAGCTGGAGGAAGCCGGAGTCGCCCCCGGAGGAGTCACCGGAATCTCGTCCTGACAGTGTGGAGGACAACGAAAATGGCGAAGAGGACGGGAACAAGAACGAAGCTTGA | 1266 | 53.24 | MPAMASPWGKPGAWALDSEEHEAELLKEEQEQQQQQQQQKKAELSLDFPSLNDALATKQKKKGQTLSLAEFTAHAGSGSKYSSQGRTHEDVLVLPTGPRERTAEELDRNKLGGGFRNYGSNGSYERSNRYSNGDDSSNSKWGSSRVSDENRRNDGGFNRGDSSKEFVPSRADEVDNWASTKKPMAGNGFERRDRGLGFSDSQSSKADESESWVSNKSNVPSDARRFGANGGFDRERRGGFPASGGGADSDTWGRKKDEGNIGGGGGGGADSDTWGRKKDEGNSGGGGGGGSRPKLNLQPRTLPVNDVKSSEISGTTARSKSSNPFGEARPREEVLAEKGHDWKKLDEELELKIKEVSMEKTEKSNAIGKKSFGNGTTRAAEDRTERSWRKPESPPEESPESRPDSVEDNENGEEDGNKNEA | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12225354 | 12226742 | + | CmoCh11G017280.1 | Cmo11g01728 | 392347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 23 | 46 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 30 | 45 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 74 | 342 | - | - | |
Cmo11g01728 | 421 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 | 1 | 393 | - | - | |
Cmo11g01728 | 421 | Pfam | Plant specific eukaryotic initiation factor 4B | 201 | 365 | IPR010433 | GO:0003743 | |
Cmo11g01728 | 421 | Pfam | Plant specific eukaryotic initiation factor 4B | 4 | 232 | IPR010433 | GO:0003743 | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 379 | 406 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 145 | 177 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 120 | 144 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 302 | 323 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 325 | 342 | - | - | |
Cmo11g01728 | 421 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 393 | IPR010433 | GO:0003743 | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 199 | 222 | - | - | |
Cmo11g01728 | 421 | MobiDBLite | consensus disorder prediction | 356 | 421 | - | - | |
Cmo11g01728 | 421 | Coils | Coil | 16 | 47 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00319 | Cmo11g01728 | CCT | |
Cmo11g01728 | Cmo20g00764 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00319 | Cmo-Chr2:1634465 | Cmo11g01728 | Cmo-Chr11:12225354 | 1.81E-124 | dispersed | |
Cmo05g00053 | Cmo-Chr5:191618 | Cmo11g01728 | Cmo-Chr11:12225354 | 1.57E-45 | dispersed | |
Cmo11g01728 | Cmo-Chr11:12225354 | Cmo12g00028 | Cmo-Chr12:163125 | 1.85E-33 | dispersed | |
Cmo11g01728 | Cmo-Chr11:12225354 | Cmo20g00764 | Cmo-Chr20:3837167 | 2.56E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01728 | - | - | bhj:120077882 | 577.785 |