Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01739 | ATGGACGACGGGGAGATTGATTTTTCGAATCAAGAAGTGTTTTCGAACCCTAATATGGCGATTCCAAGCAGTTGCTCAATGGATAGTTTCTTTGATGATCTTCTCAAAGACGTTCATACTTGTACTCATACTCATACTTGCATTCCACCGGGCCCTGATTACTCTCATACCCACACCTGTTTCCATGTCCACACTAAAATTCTCCCTGCCTCACCTGAAGAAGACAAGGTTGTTACTGATGATACTGCGGAATCGACTGAAAAGAAGTCAAAGAAACGCCCGTTGGGCAACCAGGAAGCTGTTCGTAAGTATCGTGAGAAGAAGAAGGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAAGGGCAGGCAGCATTGGAGGCTGAGATTACTCGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCGTTTCCTTATCAGAAAACTGGTAATCCCAACCTGTCCAACACAAGCAACCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGATGATCAGGTTTACTGCCTTCATCCTGAGGGTAATGGAAGTAGAAGTGGTGAAGGTGCTGTGATCAATGGACAGAGTTTTGGTGCTTGTGGATTCGAAAATCTTCAGTGTTTGGCGAATCATGACTCGGGATCAAAAGAGCTACTCGGGGACGGGATGGGGAATGCTGTTTCGAATGATACTTCTTCTGGAGTGACAAAGAGAAAAGGTGAAAACTGGGGCCTCCATTTTCTATGA | 813 | 45.26 | MDDGEIDFSNQEVFSNPNMAIPSSCSMDSFFDDLLKDVHTCTHTHTCIPPGPDYSHTHTCFHVHTKILPASPEEDKVVTDDTAESTEKKSKKRPLGNQEAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEITRLKCLLVDIRGRIEGEIGSFPYQKTGNPNLSNTSNPGAYVMNPCNMQCDDQVYCLHPEGNGSRSGEGAVINGQSFGACGFENLQCLANHDSGSKELLGDGMGNAVSNDTSSGVTKRKGENWGLHFL | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12283825 | 12284637 | + | CmoCh11G017390.1 | Cmo11g01739 | 392358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01739 | 270 | SMART | brlzneu | 85 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01739 | 270 | Coils | Coil | 105 | 132 | - | - | |
Cmo11g01739 | 270 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01739 | 270 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 241 | - | - | |
Cmo11g01739 | 270 | PANTHER | BASIC LEUCINE ZIPPER 23 | 1 | 241 | - | - | |
Cmo11g01739 | 270 | Pfam | Basic region leucine zipper | 86 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01739 | 270 | SUPERFAMILY | Leucine zipper domain | 89 | 135 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo11g01739 | 270 | CDD | bZIP | 91 | 143 | - | - | |
Cmo11g01739 | 270 | Gene3D | - | 75 | 153 | - | - | |
Cmo11g01739 | 270 | MobiDBLite | consensus disorder prediction | 72 | 102 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00256 | Cmo11g01739 | CCT | |
Cmo11g01739 | Cmo20g00745 | CCT | |
Cmo11g01739 | Cmo19g00747 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01739 | Cmo-Chr11:12283825 | Cmo19g00747 | Cmo-Chr19:7647003 | 3.71E-155 | wgd | |
Cmo11g01739 | Cmo-Chr11:12283825 | Cmo02g00256 | Cmo-Chr2:1232286 | 1.98E-129 | wgd | |
Cmo11g01739 | Cmo-Chr11:12283825 | Cmo20g00745 | Cmo-Chr20:3731642 | 3.65E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10649 | PF07716 | bZIP_2 | 9.50E-13 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01739 | K25785 | - | csv:101208161 | 454.521 |