Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01739 ATGGACGACGGGGAGATTGATTTTTCGAATCAAGAAGTGTTTTCGAACCCTAATATGGCGATTCCAAGCAGTTGCTCAATGGATAGTTTCTTTGATGATCTTCTCAAAGACGTTCATACTTGTACTCATACTCATACTTGCATTCCACCGGGCCCTGATTACTCTCATACCCACACCTGTTTCCATGTCCACACTAAAATTCTCCCTGCCTCACCTGAAGAAGACAAGGTTGTTACTGATGATACTGCGGAATCGACTGAAAAGAAGTCAAAGAAACGCCCGTTGGGCAACCAGGAAGCTGTTCGTAAGTATCGTGAGAAGAAGAAGGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAAGGGCAGGCAGCATTGGAGGCTGAGATTACTCGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCGTTTCCTTATCAGAAAACTGGTAATCCCAACCTGTCCAACACAAGCAACCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGATGATCAGGTTTACTGCCTTCATCCTGAGGGTAATGGAAGTAGAAGTGGTGAAGGTGCTGTGATCAATGGACAGAGTTTTGGTGCTTGTGGATTCGAAAATCTTCAGTGTTTGGCGAATCATGACTCGGGATCAAAAGAGCTACTCGGGGACGGGATGGGGAATGCTGTTTCGAATGATACTTCTTCTGGAGTGACAAAGAGAAAAGGTGAAAACTGGGGCCTCCATTTTCTATGA 813 45.26 MDDGEIDFSNQEVFSNPNMAIPSSCSMDSFFDDLLKDVHTCTHTHTCIPPGPDYSHTHTCFHVHTKILPASPEEDKVVTDDTAESTEKKSKKRPLGNQEAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEITRLKCLLVDIRGRIEGEIGSFPYQKTGNPNLSNTSNPGAYVMNPCNMQCDDQVYCLHPEGNGSRSGEGAVINGQSFGACGFENLQCLANHDSGSKELLGDGMGNAVSNDTSSGVTKRKGENWGLHFL 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12283825 12284637 + CmoCh11G017390.1 Cmo11g01739 392358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01739 270 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Cmo11g01739 270 Coils Coil 105 132 - -
Cmo11g01739 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cmo11g01739 270 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 241 - -
Cmo11g01739 270 PANTHER BASIC LEUCINE ZIPPER 23 1 241 - -
Cmo11g01739 270 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700|GO:0006355
Cmo11g01739 270 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Cmo11g01739 270 CDD bZIP 91 143 - -
Cmo11g01739 270 Gene3D - 75 153 - -
Cmo11g01739 270 MobiDBLite consensus disorder prediction 72 102 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00256 Cmo11g01739 CCT
Cmo11g01739 Cmo20g00745 CCT
Cmo11g01739 Cmo19g00747 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01739 Cmo-Chr11:12283825 Cmo19g00747 Cmo-Chr19:7647003 3.71E-155 wgd
Cmo11g01739 Cmo-Chr11:12283825 Cmo02g00256 Cmo-Chr2:1232286 1.98E-129 wgd
Cmo11g01739 Cmo-Chr11:12283825 Cmo20g00745 Cmo-Chr20:3731642 3.65E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10649 PF07716 bZIP_2 9.50E-13 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01739 K25785 - csv:101208161 454.521