Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01746 ATGTCGAAAGAGGTGATGGAAGAAGGACAATCCGGCCTGAGAAAGGACTATGTCGACCCACCGCCGGCCCCGCTCATCGACGTCGCCGAACTCTCCCTCTGGTCCTTTTACAGAGCACTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACGATCGCCACCGTCATCGGCAACAACAAACAGACCAAGGTTTGCGACGGCGTCGGAATCCTCGGAATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGAATCTCAGGTGGACACATTAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCCGTCGGGTACATGGTAGCGCAGTGTGCCGGAGCAATCGTCGGCGTTGGGTTGGTTAAGGCGTTTATGAAGCACGATTATAACGGCCACGGCGGCGGAGCTAACTCCGTTCAGTCTGGTTACAGTAGGGGTACGGCTCTTGGCGCTGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACCGATCCCAAGAGAAGCGCGCGTGACTCTCACATTCCGGTAAGTTTCTTCTCCGACCACCATGGATCTTGGATTTTCATAACGAATATCGTTACGAAGTCATATTTGGTTTTGGCGCCATTGCCGATTGGATTTGCGGTGTTTATGGTTCATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCGGCGAGAAGCTTCGGCGCCGCCGTGATTTACAACAGTGAAAAAGCCTGGAACGACCATTGGATCTTCTGGGTCGGTCCGTTCGTCGGAGCACTGGCGGCGGCTGCGTACCACCAGTATATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAATTGA 912 54.28 MSKEVMEEGQSGLRKDYVDPPPAPLIDVAELSLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKVCDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAIVGVGLVKAFMKHDYNGHGGGANSVQSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVSFFSDHHGSWIFITNIVTKSYLVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNSEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12320740 12322234 + CmoCh11G017460.1 Cmo11g01746 392365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01746 303 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cmo11g01746 303 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 PANTHER AQUAPORIN PIP-TYPE-RELATED 217 303 - -
Cmo11g01746 303 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 196 - -
Cmo11g01746 303 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 217 303 IPR034294 -
Cmo11g01746 303 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 196 IPR034294 -
Cmo11g01746 303 Gene3D Glycerol uptake facilitator protein. 23 303 IPR023271 -
Cmo11g01746 303 SUPERFAMILY Aquaporin-like 34 287 IPR023271 -
Cmo11g01746 303 CDD MIP 38 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01746 303 Pfam Major intrinsic protein 31 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01746 Cmo19g00753 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01746 Cmo-Chr11:12320740 Cmo04g01442 Cmo-Chr4:7380649 3.64E-151 dispersed
Cmo11g01746 Cmo-Chr11:12320740 Cmo19g00753 Cmo-Chr19:7683024 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01746 K09872 - csv:101209627 530.791