Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01752 | ATGTTATCGGAGTTGATGAACTTATTGAGGGCCTGTTTTGGGCCAAGCTCCGATCGGTCTGCAGCGGGCGATATCAGGGGGCGACAGGACGGGTTGTTGTGGTACAAAGATAGTGGACACCATTTGAATGGTGAGTACTCAATGTCTGTTGTTCAGGCCAACAATTTGCTTGAAGATCAGAGTCAGATTGAGTCAGGCAGTTTGAGCTCAGATGAGTCTGGTCCCTTTGGGACCTTTGTTGGTGTGTATGATGGCCATGGAGGCCCCGAGACGTCGCGGTATGTCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCCGAGCAAGATTCTATGTCTGCGGATGTAATACGCAAGGCATTTCAAGCGACAGAAGATGGTTTTCTTTCTATAGTCCGAAGACAATGGTCAACGAATCCACAAATTGCTGCTGTTGGTTCATGTTGTCTTGTTGGTGTAATATGTAATGGGACTCTCTATATTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAATGGTGAAGGCAACCGGTGATGTTATAGCCATTCAGTTATCGACGGAGCATAATGTCGCTAACGAGTCTGTGCGGCAAGAGCTGCAATCTTTGCACCCCGAAGACTCGCAAATTGTGGTTTTAAAGCATAATGTTTGGCGTGTAAAGGGCATAATACAGATTTCCAGATCTATAGGCGATGTCTACTTGAAAAAAGCCGAGTTCAACAGAGAGCCTCTGTATTCAAAGTTTCGAGTTCGCGAACCCTTCAAGAAGCCGATTTTGAGCTCCGAACCGGCCATTTCTGAGACCCAGTTGAAGCCAGATGATCAATTCATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTACCAATCAGGAAGCCGTCAATATTGTTCATAAGCATTCTCAAAGTGGAAGTGCACGAAGACTCGTCAAAGCTGCACTTCAAATAGCTGCAAAGAAGAGAGAAATGAGATACTCAGACTTAAAGAAGATCGACCGCGGCGTTCGTCGCCATTTCCACGACGACATCACCGTGGTGGTTGTGTTTCTCGATTCAAATCTACTCTTCAGAGCCAGCTCCACAAAGAGCTCGAGTGTCTCACTACGAGGAGGTGGAGTCAACAACTGGCTCCCTAACTCTTTAGCACCCGTCCCTACGCCGACGTAG | 1176 | 46.68 | MLSELMNLLRACFGPSSDRSAAGDIRGRQDGLLWYKDSGHHLNGEYSMSVVQANNLLEDQSQIESGSLSSDESGPFGTFVGVYDGHGGPETSRYVCDHLFQHLKRFTSEQDSMSADVIRKAFQATEDGFLSIVRRQWSTNPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRMVKATGDVIAIQLSTEHNVANESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYSKFRVREPFKKPILSSEPAISETQLKPDDQFIIFASDGLWEHLTNQEAVNIVHKHSQSGSARRLVKAALQIAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLLFRASSTKSSSVSLRGGGVNNWLPNSLAPVPTPT | 391 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12348584 | 12353957 | + | CmoCh11G017520.1 | Cmo11g01752 | 392371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01752 | 391 | SUPERFAMILY | PP2C-like | 48 | 354 | IPR036457 | - | |
Cmo11g01752 | 391 | PANTHER | ALPHABET, ISOFORM E-RELATED | 6 | 380 | - | - | |
Cmo11g01752 | 391 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN | 6 | 380 | - | - | |
Cmo11g01752 | 391 | Gene3D | - | 34 | 361 | IPR036457 | - | |
Cmo11g01752 | 391 | Pfam | Protein phosphatase 2C | 77 | 317 | IPR001932 | - | |
Cmo11g01752 | 391 | CDD | PP2Cc | 46 | 353 | IPR001932 | - | |
Cmo11g01752 | 391 | SMART | PP2C_4 | 37 | 351 | IPR001932 | - | |
Cmo11g01752 | 391 | ProSitePatterns | PPM-type phosphatase domain signature. | 79 | 87 | IPR000222 | GO:0043169 | |
Cmo11g01752 | 391 | ProSiteProfiles | PPM-type phosphatase domain profile. | 45 | 353 | IPR001932 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00266 | Cmo11g01752 | CCT | |
Cmo11g01752 | Cmo20g00737 | CCT | |
Cmo11g01752 | Cmo19g00763 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01752 | Cmo-Chr11:12348584 | Cmo16g01301 | Cmo-Chr16:9262899 | 0 | dispersed | |
Cmo11g01752 | Cmo-Chr11:12348584 | Cmo19g00763 | Cmo-Chr19:7736007 | 0 | wgd | |
Cmo11g01752 | Cmo-Chr11:12348584 | Cmo02g00266 | Cmo-Chr2:1281411 | 0 | wgd | |
Cmo11g01752 | Cmo-Chr11:12348584 | Cmo20g00737 | Cmo-Chr20:3678588 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01752 | - | K01102 | csv:101211601 | 682.559 |