Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01752 ATGTTATCGGAGTTGATGAACTTATTGAGGGCCTGTTTTGGGCCAAGCTCCGATCGGTCTGCAGCGGGCGATATCAGGGGGCGACAGGACGGGTTGTTGTGGTACAAAGATAGTGGACACCATTTGAATGGTGAGTACTCAATGTCTGTTGTTCAGGCCAACAATTTGCTTGAAGATCAGAGTCAGATTGAGTCAGGCAGTTTGAGCTCAGATGAGTCTGGTCCCTTTGGGACCTTTGTTGGTGTGTATGATGGCCATGGAGGCCCCGAGACGTCGCGGTATGTCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCCGAGCAAGATTCTATGTCTGCGGATGTAATACGCAAGGCATTTCAAGCGACAGAAGATGGTTTTCTTTCTATAGTCCGAAGACAATGGTCAACGAATCCACAAATTGCTGCTGTTGGTTCATGTTGTCTTGTTGGTGTAATATGTAATGGGACTCTCTATATTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAATGGTGAAGGCAACCGGTGATGTTATAGCCATTCAGTTATCGACGGAGCATAATGTCGCTAACGAGTCTGTGCGGCAAGAGCTGCAATCTTTGCACCCCGAAGACTCGCAAATTGTGGTTTTAAAGCATAATGTTTGGCGTGTAAAGGGCATAATACAGATTTCCAGATCTATAGGCGATGTCTACTTGAAAAAAGCCGAGTTCAACAGAGAGCCTCTGTATTCAAAGTTTCGAGTTCGCGAACCCTTCAAGAAGCCGATTTTGAGCTCCGAACCGGCCATTTCTGAGACCCAGTTGAAGCCAGATGATCAATTCATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTACCAATCAGGAAGCCGTCAATATTGTTCATAAGCATTCTCAAAGTGGAAGTGCACGAAGACTCGTCAAAGCTGCACTTCAAATAGCTGCAAAGAAGAGAGAAATGAGATACTCAGACTTAAAGAAGATCGACCGCGGCGTTCGTCGCCATTTCCACGACGACATCACCGTGGTGGTTGTGTTTCTCGATTCAAATCTACTCTTCAGAGCCAGCTCCACAAAGAGCTCGAGTGTCTCACTACGAGGAGGTGGAGTCAACAACTGGCTCCCTAACTCTTTAGCACCCGTCCCTACGCCGACGTAG 1176 46.68 MLSELMNLLRACFGPSSDRSAAGDIRGRQDGLLWYKDSGHHLNGEYSMSVVQANNLLEDQSQIESGSLSSDESGPFGTFVGVYDGHGGPETSRYVCDHLFQHLKRFTSEQDSMSADVIRKAFQATEDGFLSIVRRQWSTNPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRMVKATGDVIAIQLSTEHNVANESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYSKFRVREPFKKPILSSEPAISETQLKPDDQFIIFASDGLWEHLTNQEAVNIVHKHSQSGSARRLVKAALQIAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLLFRASSTKSSSVSLRGGGVNNWLPNSLAPVPTPT 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12348584 12353957 + CmoCh11G017520.1 Cmo11g01752 392371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01752 391 SUPERFAMILY PP2C-like 48 354 IPR036457 -
Cmo11g01752 391 PANTHER ALPHABET, ISOFORM E-RELATED 6 380 - -
Cmo11g01752 391 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 6 380 - -
Cmo11g01752 391 Gene3D - 34 361 IPR036457 -
Cmo11g01752 391 Pfam Protein phosphatase 2C 77 317 IPR001932 -
Cmo11g01752 391 CDD PP2Cc 46 353 IPR001932 -
Cmo11g01752 391 SMART PP2C_4 37 351 IPR001932 -
Cmo11g01752 391 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Cmo11g01752 391 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00266 Cmo11g01752 CCT
Cmo11g01752 Cmo20g00737 CCT
Cmo11g01752 Cmo19g00763 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01752 Cmo-Chr11:12348584 Cmo16g01301 Cmo-Chr16:9262899 0 dispersed
Cmo11g01752 Cmo-Chr11:12348584 Cmo19g00763 Cmo-Chr19:7736007 0 wgd
Cmo11g01752 Cmo-Chr11:12348584 Cmo02g00266 Cmo-Chr2:1281411 0 wgd
Cmo11g01752 Cmo-Chr11:12348584 Cmo20g00737 Cmo-Chr20:3678588 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01752 - K01102 csv:101211601 682.559