Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01756 ATGCCCAATTTGGTGATGATTCGCCGGAGAATTTGGTCAACCAAGACCTTTCACACAGCTGCTTTAACAATCTTCAATGCTCAGCGGTATGTTCGCCGTCGTCCAACTACATTCAACATTTCTTTTCAGTTGAAACAGAGCTGTTTCTCTTCTTTTCAAGCTCCGGAATTCTATTCCCTGAACAAGAGGATGTCTTATTTGATTCGAACAGGTCAAATAATTGAAGCGAGAAAATTGTTTGATAGCATTAAGCATCGGAATACGATCACTTGGAATACGATGATCACTGGGTATGTGAAAAGAAGAGAGATGACAAAAGCACGACAGTTGTTCGATGAAATGCCTCACAGAGACATTGTGTCATGGAACTTGATGTTATCAGGTTATATATCTTGTGGTGGAAGGTACATTGAGAGTGGACGAAACCTATTTGATAAAATGCCACAAAGAGATTGTGTTTCATGGAACACAATGGTTAGTGGGTATGCCAAGAATGGGATGATGGAAGAAGCAGAAGAGCTTTTCAAGTACATGCCTGAGCGTAATGTTGTCTCATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTTATGTGGAGAAAGCTATTGAGTTCTTCAAGATGATGCCCGAACGAGACTCCGCTTCTCTTAGTGCATTGGTTTCTGGTCTGATTCAGAATGAGAAACTGGTTGAAGCTGAAAGGATTTTGCTTCAATATGGTGGGAGTGATGGTAGAGGGAATTTAGTTCATGCTTATAACACTTTAATTGCTGGATATGGTCAGAAAGGAATGATCCAAGAAGCCCGAAAACTGTTCGATTGCATCCCTAATCGACAGGAAGACGAAAATGGAAGCTTTGGGAAGAATGTGGTATCATGGAACTCTATGATTATGAGCTATGTGAGAGCTGGTGACATAGTCTCTGCTCGAGAACTCTTCGACAAAATGGTCGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTACATTCAGATCTTGGATATGAAAGAGGCCTCGAATCTGTTTGGTAGAATGTCGAATCCCGATACCCTTTCTTGGAATATGATGATTTCGGGGTTCGCTGAGATAGGTAATTTGAAACTAGCTCATGATTTGTTCATTAGGATGCCAGAGAAAAGCCTTGTCTCATGGAATTCCATGATATCTGGGTATGAGAAAAATGAAGATTATAAAGGAGCCATTAACATCTTTTTGCAGATGCAATTTGAGGGTAAGAAACCAGATAGACATACTTTATCATCAATTATCAGTGCTTGCGCTGGTTTGGTTGATCTGGCTTTAGGAACTCAGATTCATCAGTTGATTACAAAAGCATTTATTGCAGATTTGCCTATAAACAACTCTCTTGTTACCATGTACTCGAGATGTGGAGCAATCGTCGAGGCACGAACCGTTTTCGACGAAATGAACCTTCAGAGAGATGTCATTTCTTGGAACGCGATGATTGGCGCGTATGCCTCTCATGGCTTTGCAACAGAGGCTCTTCAACTTTTTGACTTGATGAAGCAATGTAATGTGCAGCCTTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGTTGGATTGATTGAGGAAGGTAGGAGGGAGTTCAACTCCATGGTTAACGCTCACGGTATCGAACCACGAGTTGAACACTATGCTGTCCTTGTCGATATCATCGGTCGACACGGGCAGCTTGAAGAAGCAATGAGTTTGATCAATAACATGCCTTGTAAACCAGATAAAGCGGTGTGGGGTGCTTTACTTGGTGCTTGTAGGGTGCACAACAATGTTGAAATGGCTCGTGTCGCGGCTGAAGCCTTGATGAAACTCGAACCAGAAAGCGCAGCTCCTTACGTGCTGCTATATAACATGTATGCTGATGTGGGACGATGGAATGATGCTGCTGAAGTGAGAACGAGGATGGAGAAGAATAATATTCAAAAGGAAACCGGTGTAGGTGTTTGTGAAGAATTTGAAGAAAGATTCAACGTGATCGTTGTATCGTGGACGTCCATTCTAAACTTTTAG 2049 41.68 MPNLVMIRRRIWSTKTFHTAALTIFNAQRYVRRRPTTFNISFQLKQSCFSSFQAPEFYSLNKRMSYLIRTGQIIEARKLFDSIKHRNTITWNTMITGYVKRREMTKARQLFDEMPHRDIVSWNLMLSGYISCGGRYIESGRNLFDKMPQRDCVSWNTMVSGYAKNGMMEEAEELFKYMPERNVVSWNAMVSGYLMNGYVEKAIEFFKMMPERDSASLSALVSGLIQNEKLVEAERILLQYGGSDGRGNLVHAYNTLIAGYGQKGMIQEARKLFDCIPNRQEDENGSFGKNVVSWNSMIMSYVRAGDIVSARELFDKMVERDTFSWNTMISGYIQILDMKEASNLFGRMSNPDTLSWNMMISGFAEIGNLKLAHDLFIRMPEKSLVSWNSMISGYEKNEDYKGAINIFLQMQFEGKKPDRHTLSSIISACAGLVDLALGTQIHQLITKAFIADLPINNSLVTMYSRCGAIVEARTVFDEMNLQRDVISWNAMIGAYASHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHVGLIEEGRREFNSMVNAHGIEPRVEHYAVLVDIIGRHGQLEEAMSLINNMPCKPDKAVWGALLGACRVHNNVEMARVAAEALMKLEPESAAPYVLLYNMYADVGRWNDAAEVRTRMEKNNIQKETGVGVCEEFEERFNVIVVSWTSILNF 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12370123 12372276 - CmoCh11G017560.1 Cmo11g01756 392375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01756 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Cmo11g01756 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Cmo11g01756 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Cmo11g01756 682 SUPERFAMILY TPR-like 162 647 IPR011990 GO:0005515
Cmo11g01756 682 PANTHER OS06G0228900 PROTEIN 56 661 - -
Cmo11g01756 682 SUPERFAMILY TPR-like 446 647 IPR011990 GO:0005515
Cmo11g01756 682 Gene3D Tetratricopeptide repeat domain 448 682 IPR011990 GO:0005515
Cmo11g01756 682 Gene3D Tetratricopeptide repeat domain 19 134 IPR011990 GO:0005515
Cmo11g01756 682 Gene3D Tetratricopeptide repeat domain 319 447 IPR011990 GO:0005515
Cmo11g01756 682 Gene3D Tetratricopeptide repeat domain 135 240 IPR011990 GO:0005515
Cmo11g01756 682 Pfam E motif 601 660 IPR046848 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 292 321 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 184 213 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 252 274 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 486 519 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 355 384 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 89 120 IPR002885 -
Cmo11g01756 682 TIGRFAM PPR: pentatricopeptide repeat domain 153 184 IPR002885 -
Cmo11g01756 682 Gene3D Tetratricopeptide repeat domain 243 318 IPR011990 GO:0005515
Cmo11g01756 682 PANTHER OS07G0578800 PROTEIN-RELATED 56 661 IPR045215 GO:0003723|GO:0009451
Cmo11g01756 682 Pfam PPR repeat family 483 531 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat family 383 430 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat family 86 118 IPR002885 -
Cmo11g01756 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Cmo11g01756 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Cmo11g01756 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 382 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 355 382 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 184 212 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 323 348 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 457 479 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 153 183 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 559 583 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 252 276 IPR002885 -
Cmo11g01756 682 Pfam PPR repeat 292 320 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01756 - - - bhj:120077123 1155.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01756 Cmo-Chr11:12370123 Cmo11g00309 Cmo-Chr11:1495130 8.55E-20 dispersed
Cmo11g01756 Cmo-Chr11:12370123 Cmo08g00596 Cmo-Chr8:3628336 6.19E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01756 Cmo_Chr11 FPKM 0.285099 0.698157 0.0 0.0 1.552217 1.570923 1.730806 0.632223 0.233045 0.355685