Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01758 | ATGTGTCTTCATATAAATACCGTTTTTGGTTCTGGTTTTGGGTTTCTTTTCTCACAATCAACCGTTGTTTTGCTTTTTCACGTAAAACCTTCGTCTGCAAACGAAAGCGAGAGAGAAAGAGAGATCGAAAGCTTGTCGCATTTTATTCTCTTTGGCTTTTGCTTTCTACATTTTTCCCTAATGGTTATGGAGGATAACGAGAGCTGTGGAAGTAGAGCGTACGGCTCCTTGTCGCCGGCGCAGTCTCGGCAACAGAGGCAGAAGTTTGAGGTCTACAATGAGGTTCTTCGCCGTCTGAAGGATTCCGTCAACGAGGAGACGCTTCAGCCTGGTTTCGATGACGAACTATGGCTTCACTTTAATCGCCTTCCTACTCGATATGCTCTCGATGTAAATGTGGAGAGGGCAGAAGACGTTCTCATGCATAAAAGATTATTGCAATGTGCTCACGATCCTGCAAATCGACCTGCAATTGAAGTTCGCCTAGTGCAGGTCCAAGCCATTTCTGATGGGAATTCAGCTGATTTTGCTGCTTCCGGTCCTGTAAAAGACACAGATCATAATTCTTCAAATTTACCGAGCAGGCAGAGCATACATCCACCACCTGCCTTTGGGTCATCTCCCAACCTTGAAGCCCTCGCCCTTGAAGCTAATAATGCTCAGGATCAGGAGGTTGATCATTCCGTACATGCCAAAACACAATCTTTCCGGCCGATGCATGAAATAACTTTCTCTACGGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGTCTGAATATCCAGGAGGCACATGCATTTTCCACTGTTGATGGTTACTCCTTGGACGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGATTGAAGACTGCGATAGAGAAGGAAATCATACAGAGGAAGGCTTGGCCAAATCATAAATCCTTTTCAATAAGGGAACGGGATATATCAATTAAACCTGATCCTGATCGTGTGGAAATTCCCACGGATGGGACTGATGTATGGGAAATTAATCCTAGACATCTGAAGTTCGAGCATAAAGTTGCATCTGGGTCATATGGAGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTCGCTATTAAAGTCCTTAAACCTGAACGCGTAGATTCAGATATGCAAAGTGAGTTTGCCCAGGAGGTGTACATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGTACTAAACCTCCAAGCTTGTGCATAGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGCACTTTTAGGCTTCCATCCTTGCTCAAGGTAGCCATTGATGTTTCTAAGGGAATGAACTACTTGCACCAAAATAACATCATTCACAGAGATCTCAAGGCCGCTAATCTTTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTCGGCGTCGCCAGAGTGAAAGCTCAATCAGGAGTCATGACTGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGCAATTGTCTTGTGGGAGCTGCTTACTGGAAAGCTACCCTATGAATTCCTTACTCCATTACAAGCTGCAGTCGGAGTGGTACAAAAGGGTTTACGGCCTATTATTCCAAAGCACACTAATCCGAAGCTGGCTGAGTTGCTGGAAAAATGCTGGCAACAAGACCCCTCATGCAGGCCTGACTTCTCTGAAATTATCGACATATTGTTGCAGATAACTAAGGAAGTTGCAGAAGATGGCGACGAACGACGGAAGGAGAAGAGTGGAGGATTACTTTCTGTGTTGAGACGAAACCACAATGAGAAGTGA | 1899 | 44.02 | MCLHINTVFGSGFGFLFSQSTVVLLFHVKPSSANESEREREIESLSHFILFGFCFLHFSLMVMEDNESCGSRAYGSLSPAQSRQQRQKFEVYNEVLRRLKDSVNEETLQPGFDDELWLHFNRLPTRYALDVNVERAEDVLMHKRLLQCAHDPANRPAIEVRLVQVQAISDGNSADFAASGPVKDTDHNSSNLPSRQSIHPPPAFGSSPNLEALALEANNAQDQEVDHSVHAKTQSFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTAIEKEIIQRKAWPNHKSFSIRERDISIKPDPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKPERVDSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFAIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPIIPKHTNPKLAELLEKCWQQDPSCRPDFSEIIDILLQITKEVAEDGDERRKEKSGGLLSVLRRNHNEK | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12398386 | 12405291 | - | CmoCh11G017580.1 | Cmo11g01758 | 392377 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01758 | 632 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 | 78 | 613 | - | - | |
Cmo11g01758 | 632 | Pfam | Protein tyrosine and serine/threonine kinase | 350 | 598 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | CDD | STKc_MAP3K-like | 356 | 599 | - | - | |
Cmo11g01758 | 632 | ProSiteProfiles | ACT domain profile. | 241 | 311 | IPR002912 | - | |
Cmo11g01758 | 632 | MobiDBLite | consensus disorder prediction | 173 | 208 | - | - | |
Cmo11g01758 | 632 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 467 | 479 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | PRINTS | Tyrosine kinase catalytic domain signature | 461 | 479 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | PRINTS | Tyrosine kinase catalytic domain signature | 526 | 548 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | PRINTS | Tyrosine kinase catalytic domain signature | 570 | 592 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | PRINTS | Tyrosine kinase catalytic domain signature | 507 | 517 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | PRINTS | Tyrosine kinase catalytic domain signature | 424 | 437 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01758 | 632 | Gene3D | Transferase(Phosphotransferase) domain 1 | 429 | 630 | - | - | |
Cmo11g01758 | 632 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 78 | 613 | - | - | |
Cmo11g01758 | 632 | SUPERFAMILY | Protein kinase-like (PK-like) | 329 | 599 | IPR011009 | - | |
Cmo11g01758 | 632 | SUPERFAMILY | ACT-like | 239 | 303 | IPR045865 | - | |
Cmo11g01758 | 632 | MobiDBLite | consensus disorder prediction | 609 | 632 | - | - | |
Cmo11g01758 | 632 | MobiDBLite | consensus disorder prediction | 183 | 203 | - | - | |
Cmo11g01758 | 632 | CDD | ACT_TyrKc | 239 | 305 | - | - | |
Cmo11g01758 | 632 | ProSiteProfiles | Protein kinase domain profile. | 350 | 600 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01758 | 632 | SMART | serkin_6 | 350 | 600 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01758 | 632 | Gene3D | Phosphorylase Kinase; domain 1 | 340 | 428 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01758 | Cmo19g00771 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g02052 | Cmo-Chr1:14338856 | Cmo11g01758 | Cmo-Chr11:12398386 | 8.97E-41 | dispersed | |
Cmo01g02053 | Cmo-Chr1:14343989 | Cmo11g01758 | Cmo-Chr11:12398386 | 8.38E-56 | dispersed | |
Cmo11g01758 | Cmo-Chr11:12398386 | Cmo16g01308 | Cmo-Chr16:9294327 | 1.68E-27 | dispersed | |
Cmo20g00274 | Cmo-Chr20:1334263 | Cmo11g01758 | Cmo-Chr11:12398386 | 1.27E-49 | dispersed | |
Cmo11g01758 | Cmo-Chr11:12398386 | Cmo19g00771 | Cmo-Chr19:7783849 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74692 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-73 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01758 | - | - | csv:101213048 | 1029.62 |