Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01759 ATGGCGGACGAGAATGGCAGCGTGGAAAGCCTCGATCGCCTTCCTTCTGCTGTCCTTGCTACCATCATGACCAAGCTCGATTTGCCTTCTATCTGCTCCATTGCTTCCACCTGCACGACCTTCCATTCCTGTGCTTCTCAACTTCTCAATTTTCTCCCTAATTTCCATCTTCTTGAAATTTCTCCAACGGTGGAATTTCTGAGGCCTCTGCTGCCTCCAAACCCTTTCCTAAGGAGCTTAAAGGTAGATTGTGGTCAGCTTGATGATTCAGCTATCCAGCTTCTGCTGAAGCCTTCCTTGCACGAACTATATCTGCATAATTGCGCTGATTTCAGTGGGAAATTGCTGTCTGAGATCGGAGGGTGCTGCAAGGATTTAAGGTCCCTCTATTTGAGTTCAGTTGCTGAAAAAAGAGGTCGGGCAATTCATATTGCGGATCTAGAAGAGTTACTAAGTGGTTGCACACGGTTGGAAGCATTAACCCTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAACTTTGCTCGAGTCTGGGCTATGGCTTCCGAAAAACTAACTTCTCTCGAGATTGGCTGTATCTATTCGGTTACAATCACCGAACTGCTTAGCCAAAATCTGGGTATCAGTAATTCTATGAATCATGTTGGCCCATCCATGTGGCCTAACATTGAAAAATTGTGCCTTTCAGTGGACTACATCACTGATGCCATGGTTGGTGCAATATCAAAAGGTCTCGCCTCCTTGACTCATTTGGAACTACAAGATGCTCCAATCATTGAACCAAGATTTTCTTTTGACCTGACCAACGTTGGCCTTCAACAAATCAAACATCTTTCAAAATTGAAGCATCTCTCTTTGGTGCGAAGTCAGGAATTTTTCGTAACTTATTTTAGAAGAGTAAATGATTTGGGGATCCTCTTGATGGCCGATGGATGCGCTGACCTGGAAAGTATCTGTCTCGGAGGCTTTTGTCGTGTTACAGACACTGGGTTCAGGACACTTCTGCACACATTCTCCAATTTAAACAAGCTTAGGGTGTTCCATGGAATCCAATTAACCCATCTAGTTTTTCACGACATCTCTGCTACTTCACTTTCCTTGAAGCATGTTAGCTTAAGATGGTGCAGTCTCCTAACGAACGATGCCGTAAAAAACTTGTCGTTGAACAAGGATCTAAGTTTTCTTGACTTGAGAGATTGCAGAAGCCTTCGGGATGAAGCGCTTCAAGCTATCAGTACTATTCCAAAACTGAAGACGTTGCTTTTGGACGGGTCCGATATTAGTGATGCGGGATTGTCTCACTTAAGACCCATGATTATGAACTCGTTAGTTTCCTTGTCTGTTAGAGGTTGCAAGAAGCTTACAGATAAATCCATCACTGTTCTATTTGATGGCTTATCCAAAATAGAACTGCAAGAATTAGATCTATCCAACCTTCCTTATCTGTCTGATACTGCAGTTTTACAACTGACCAGAAGCAGGTTTGCGATATCCGAACTCCGAATGCGTCAATGCCCTCTCATCGGCGATATCTCGGTCATGGCATTAGCCTCGATGCAAGTTAATGAAGACCAACGACATGGTAGTAGCCTCCGGTTGTTGGATTTGTACAACTGTGGTGGCCTTACACAGCTCTCATTCAAATGGTTAAAAAACCCATACTTTCCCAGGTTGAGGTGGTTGGGTGTTACAGGTAGTCTAAATCGCGACTTGGTTGATGCGTTAGCCAGAAGTAGACCGTTCTTGCACGTAGCATGCCATGGCGAGGAGTTGGGAGCCGATCATTGGGATAACTCCGACATTCTCTATATGCACCACTACGATGAGGTGGATGAATTCGAGCAGTGGCTCTTTGATGGTGAGGTCGAGGACGACGAAGACGACGACATGGCCGATGCTGAAAATGATGGAGAGGTAATTCTATGA 1926 44.55 MADENGSVESLDRLPSAVLATIMTKLDLPSICSIASTCTTFHSCASQLLNFLPNFHLLEISPTVEFLRPLLPPNPFLRSLKVDCGQLDDSAIQLLLKPSLHELYLHNCADFSGKLLSEIGGCCKDLRSLYLSSVAEKRGRAIHIADLEELLSGCTRLEALTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTITELLSQNLGISNSMNHVGPSMWPNIEKLCLSVDYITDAMVGAISKGLASLTHLELQDAPIIEPRFSFDLTNVGLQQIKHLSKLKHLSLVRSQEFFVTYFRRVNDLGILLMADGCADLESICLGGFCRVTDTGFRTLLHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVKNLSLNKDLSFLDLRDCRSLRDEALQAISTIPKLKTLLLDGSDISDAGLSHLRPMIMNSLVSLSVRGCKKLTDKSITVLFDGLSKIELQELDLSNLPYLSDTAVLQLTRSRFAISELRMRQCPLIGDISVMALASMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRLRWLGVTGSLNRDLVDALARSRPFLHVACHGEELGADHWDNSDILYMHHYDEVDEFEQWLFDGEVEDDEDDDMADAENDGEVIL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12414326 12418304 - CmoCh11G017590.1 Cmo11g01759 392378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01759 641 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 14 563 - -
Cmo11g01759 641 SMART LRR_CC_2 364 389 IPR006553 -
Cmo11g01759 641 SMART LRR_CC_2 312 337 IPR006553 -
Cmo11g01759 641 SMART LRR_CC_2 440 465 IPR006553 -
Cmo11g01759 641 SMART LRR_CC_2 468 493 IPR006553 -
Cmo11g01759 641 SMART LRR_CC_2 494 519 IPR006553 -
Cmo11g01759 641 SMART LRR_CC_2 390 414 IPR006553 -
Cmo11g01759 641 Gene3D Ribonuclease Inhibitor 5 263 IPR032675 -
Cmo11g01759 641 Gene3D Ribonuclease Inhibitor 264 467 IPR032675 -
Cmo11g01759 641 Gene3D Ribonuclease Inhibitor 468 586 IPR032675 -
Cmo11g01759 641 SUPERFAMILY RNI-like 53 377 - -
Cmo11g01759 641 Pfam F-box domain 11 45 IPR001810 GO:0005515
Cmo11g01759 641 PANTHER UNCHARACTERIZED 14 563 - -
Cmo11g01759 641 SUPERFAMILY F-box domain 6 50 IPR036047 GO:0005515
Cmo11g01759 641 SUPERFAMILY RNI-like 306 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01759 - - - csv:101213291 1146.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01054 Cmo-Chr9:5698149 Cmo11g01759 Cmo-Chr11:12414326 3.49E-77 dispersed
Cmo11g01759 Cmo-Chr11:12414326 Cmo04g01335 Cmo-Chr4:6811567 4.18E-14 dispersed
Cmo11g01759 Cmo-Chr11:12414326 Cmo12g00287 Cmo-Chr12:1823603 8.20E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g223 . . . . . . . . . Cmo11g01759 . . . . Sed04g3823 Cpe04g00612 . Bhi05g01663 Tan02g0637 Cmetu01g0006 . . . . . . . . . . . . . . . . . . . Blo04g00588 . . Bda14g00633 . . Bma03g00621 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01759 Cmo_Chr11 FPKM 11.876923 12.734158 0.0 2.096471 1.412221 0.937665 1.821123 0.0 0.0 0.0