Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01762 ATGGAAGGTACCGAGAAAGAAACGTTGTCGAAGAAGGAAGAAGAAGATGGGCAAGCCATCATCCAAATGTGGAAATACATATTTGGTTTCTCTGAAATGGCAGCCATAAAATGTGCCATAGAGCTTCAAATAGCTGATATCATTGAAGACCATGGCAGCCCCATGACATTGCCCCAACTCTCCTCCACTCTACACTGTTCTTCACCTCTCCTGCATCGAATCTTAAGATTCCTCGTCCGTCGAGGAATCTTCAAGGAATATTCCATATCCGACGACCTGATCGGCTATGCTCAGACGCCTCTATCGCGCTTGCTCGCCACCAAGAACGGCAGCAGCTTGGCCCCCTTCATGCTGCTGGAAGCCAGCCCGGCGATGCTTGCAGCATGGCATAACTTGAGCGCGCACGTCAAGAGTGGCGGCAGGTTCCCATTTGAGGCTGCGCATGGCATGGATGTGTGGGGCTATGCTGCGGCTAATCCGAAGCATAATAGGCTGATTAATGAGGCCATGGGGTGCTCTACGGGGCTGGTTGTGGCTGCTATACTTGATGGTTGTCAAGGGATTTTTGATGGGGTTGGGAGTTTGGTTGATGTGGGTGGAGGAAATGGTGCTACTTTGAGTGTTGTTGTTAAGGCTTGTTCATGGATTCGAGGTATTAATTTTGATCTTCCTCATGTTGTTTCTACGTCGCCTGTGTATGAACGTGTGGAGCATGTTGCGGGTGATATGTTTGATTTTGTTCCGAATGCTGATGCTGCTTTCATCAAGTGGACTCTACATGATTGGAACGACGAAGAATGTATTACTATTTTAAAGAATTGTAAGGAGGCGATTCCGAAGAACACAGGTAAAGTGATTATTGTTGATGCGGTAATCGATGAAAAAGAAGAAACCGAGCAATCAGATGTTGGGTTGATGTTGGACTTGGTGATGATGGCTCATACCAGCACTGGCAAAGAAAGAACACGTAAAGAATGGGCATATGTTATTAATGCAGCTGGTTTTAGTCGATTCACTGTTACTCGCATTCAAGCTATCCAATCAGTTATCGAGTGCTTCCCATAA 1065 46.48 MEGTEKETLSKKEEEDGQAIIQMWKYIFGFSEMAAIKCAIELQIADIIEDHGSPMTLPQLSSTLHCSSPLLHRILRFLVRRGIFKEYSISDDLIGYAQTPLSRLLATKNGSSLAPFMLLEASPAMLAAWHNLSAHVKSGGRFPFEAAHGMDVWGYAAANPKHNRLINEAMGCSTGLVVAAILDGCQGIFDGVGSLVDVGGGNGATLSVVVKACSWIRGINFDLPHVVSTSPVYERVEHVAGDMFDFVPNADAAFIKWTLHDWNDEECITILKNCKEAIPKNTGKVIIVDAVIDEKEETEQSDVGLMLDLVMMAHTSTGKERTRKEWAYVINAAGFSRFTVTRIQAIQSVIECFP 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12425640 12427018 - CmoCh11G017620.1 Cmo11g01762 392381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01762 354 Gene3D - 5 105 IPR036388 -
Cmo11g01762 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 354 IPR016461 GO:0008168
Cmo11g01762 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Cmo11g01762 354 PANTHER O-METHYLTRANSFERASE 8 348 IPR016461 GO:0008168
Cmo11g01762 354 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 8 348 - -
Cmo11g01762 354 Gene3D Vaccinia Virus protein VP39 107 354 IPR029063 -
Cmo11g01762 354 Pfam Dimerisation domain 35 79 IPR012967 GO:0046983
Cmo11g01762 354 SUPERFAMILY Winged helix DNA-binding domain 13 109 IPR036390 -
Cmo11g01762 354 Pfam O-methyltransferase domain 129 336 IPR001077 GO:0008171
Cmo11g01762 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 352 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01762 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101222999 481.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01762 Cmo19g00776 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01762 Cmo-Chr11:12425640 Cmo19g00778 Cmo-Chr19:7832846 4.18E-161 dispersed
Cmo02g00114 Cmo-Chr2:598108 Cmo11g01762 Cmo-Chr11:12425640 3.32E-106 transposed
Cmo11g01762 Cmo-Chr11:12425640 Cmo19g00773 Cmo-Chr19:7808684 1.21E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01762 Cmo_Chr11 FPKM 7.266218 8.235972 14.214321 15.35166 5.142519 5.06126 4.637224 21.76791 24.687794 21.322708