Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01767 ATGGGCTTATTCCTTTGCCTTCTCTTGTTCTTCCTCGCCTCATCAGCTTCTGCCTGTGATCGCTGTCTCCACCACTCCAAGACTGCCTATATCTCAAATGATTCAACACTTTCATCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCGACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGATGAGGTGCAAAGACAAGAAACTTTGCAGCACATCTGGGACCAAACTCATTTTGACTGATCTGAATCTACACACCAATAGAACTGATCTTGTTTTGAGTAAGAAAGCTTTTTCTGCGTTGGCTCAAAAGGGCCAACATTACAATATCTTCAAGCGCACGACTCTCGACGTTGAATACAAAAGGATACCATGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGGCTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTGGTTCACCTGCGTCCGGTGGATTGGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCGGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACAGCGGAGCGGGTGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA 792 49.37 MGLFLCLLLFFLASSASACDRCLHHSKTAYISNDSTLSSGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTSGTKLILTDLNLHTNRTDLVLSKKAFSALAQKGQHYNIFKRTTLDVEYKRIPCEYKKQNLSVRIEESSQKPHHMAVKFLYQGGQTDILLVHLRPVDWGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHW 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12448437 12450787 + CmoCh11G017670.1 Cmo11g01767 392386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01767 263 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Cmo11g01767 263 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Cmo11g01767 263 Gene3D - 12 140 IPR036908 -
Cmo11g01767 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cmo11g01767 263 Pfam Lytic transglycolase 57 126 IPR009009 -
Cmo11g01767 263 Gene3D - 141 245 IPR036749 -
Cmo11g01767 263 SUPERFAMILY Barwin-like endoglucanases 7 142 IPR036908 -
Cmo11g01767 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cmo11g01767 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cmo11g01767 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cmo11g01767 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cmo11g01767 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Cmo11g01767 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
Cmo11g01767 263 PANTHER EXPANSIN-B3 5 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01767 Cmo-Chr11:12448437 Cmo19g00793 Cmo-Chr19:7925672 1.27E-90 dispersed
Cmo11g01767 Cmo-Chr11:12448437 Cmo11g01768 Cmo-Chr11:12451304 4.38E-69 tandem
Cmo11g01767 Cmo-Chr11:12448437 Cmo19g00790 Cmo-Chr19:7916194 1.74E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01767 - - cpep:111792494 514.612